{"id":"W2942996180","doi":"10.1186/s12879-019-3965-8","title":"Clostridium difficile isolated from faecal samples in patients with ulcerative colitis","year":2019,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; University of Manitoba","funders":"Isfahan University of Medical Sciences; Islamic Azad University","keywords":"Clostridium difficile; Multilocus sequence typing; Microbiology; Ribotyping; Clindamycin; Metronidazole; Typing; Vancomycin; Medical microbiology; Biology; Pseudomembranous colitis; Clostridium difficile toxin A; Ulcerative colitis; Erythromycin; Antibiotic resistance; Medicine; Antibiotics; Internal medicine; Polymerase chain reaction; Staphylococcus aureus; Genotype; Disease; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006694683,0.0003857812,0.0006514998,0.0003044401,0.0001100938,0.00008413455,0.0001353855,0.0001705113,0.002263459],"category_scores_gemma":[0.0002326685,0.0003192287,0.0001746209,0.0006572165,0.0001294771,0.0001554424,0.0001041396,0.0004001798,0.0004853899],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004828789,"about_ca_system_score_gemma":0.0005539352,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001349707,"about_ca_topic_score_gemma":0.0009420625,"domain_scores_codex":[0.9973377,0.0001547424,0.0004281346,0.0007036294,0.0007070278,0.0006687933],"domain_scores_gemma":[0.9982101,0.0003943798,0.000111347,0.0005668732,0.0003268897,0.0003904347],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00560302,0.00206567,0.9900034,0.0001089986,0.0001298251,0.00003599486,0.0001012739,0.00009159366,0.0003517453,0.00006261333,0.0005994944,0.0008463502],"study_design_scores_gemma":[0.01273256,0.002059089,0.9805848,0.0002280163,0.0001446564,0.000005202574,0.0001469122,0.0003819487,0.002750142,0.00005051715,0.0005123349,0.000403797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945578,0.0001468909,0.00004963758,0.00005427628,0.0001893128,0.001680994,0.0008606209,0.000199935,0.002260515],"genre_scores_gemma":[0.9979768,0.0000317116,0.00003552626,0.0001286719,0.0001994779,0.00009789263,0.001083972,0.00006858504,0.0003773864],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009418597,"threshold_uncertainty_score":0.999926,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01118103758134011,"score_gpt":0.2485056924558342,"score_spread":0.2373246548744941,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}