{"id":"W2943640254","doi":"10.1139/cjm-2018-0587","title":"Rapid identification of <i>Erwinia amylovora</i> and <i>Pseudomonas syringae</i> species and characterization of <i>E. amylovora</i> streptomycin resistance using quantitative PCR assays","year":2019,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Vineland Research and Innovation Centre; Université de Sherbrooke; Agriculture and Agri-Food Canada","funders":"","keywords":"Erwinia; Fire blight; Biology; Pseudomonas syringae; Microbiology; Population; Streptomycin; Xanthomonas; Cultivar; Bacteria; Antibiotics; Pathogen; Horticulture; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004335297,0.0001303461,0.000411898,0.00006663874,0.00008580375,0.00002306274,0.0001519307,0.0001005554,0.00005019012],"category_scores_gemma":[0.00006518017,0.00007040209,0.00005535805,0.000178746,0.0002761552,0.000160661,0.00002671673,0.000103206,0.000001625749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003324783,"about_ca_system_score_gemma":0.00007648927,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002563609,"about_ca_topic_score_gemma":0.004723827,"domain_scores_codex":[0.9988294,0.0001552501,0.0005848116,0.0001824499,0.00005098671,0.0001971453],"domain_scores_gemma":[0.9985717,0.0001683015,0.0008461945,0.00005345625,0.0002560272,0.0001043509],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005380955,0.000009311977,0.02377882,0.00003140825,0.00003983418,0.000004543881,0.0002472806,6.58557e-7,0.975183,0.0001629983,0.00006548785,0.0004229161],"study_design_scores_gemma":[0.0005628786,0.0004649284,0.5300633,0.0003159706,0.00008841296,0.0003322075,0.001114585,0.000008697833,0.4519357,0.0001002688,0.01471182,0.0003012029],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968046,0.001459604,0.000008007191,0.000292145,0.0002374229,0.0001355773,0.001000146,0.000002465031,0.00006005526],"genre_scores_gemma":[0.9990093,0.0005255485,0.000213907,0.0000558872,0.00004558319,5.408284e-7,0.0000681535,0.000001715367,0.00007935086],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5232472,"threshold_uncertainty_score":0.2870914,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01911089103140415,"score_gpt":0.1958477232541868,"score_spread":0.1767368322227827,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}