{"id":"W2943661216","doi":"10.1128/jb.00213-19","title":"Structural and Functional Variation in Outer Membrane Polysaccharide Export (OPX) Proteins from the Two Major Capsule Assembly Pathways Present in Escherichia coli","year":2019,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Biology; Bacterial outer membrane; Periplasmic space; Escherichia coli; Peptidoglycan; Microbiology; Virulence; Cell wall; Salmonella enterica; Cell envelope; Bacterial cell structure; Polysaccharide; Bacterial capsule; Bacteria; Biochemistry; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003149435,0.0004708796,0.0002261342,0.0005226787,0.0002486271,0.0003581957,0.0003091378,0.00058437,0.001299379],"category_scores_gemma":[0.0004573445,0.0002039809,0.0004064485,0.0003796804,0.000566354,0.0002103449,0.0004653257,0.0007958494,0.0003389533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003198366,"about_ca_system_score_gemma":0.0001708811,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00066126,"about_ca_topic_score_gemma":0.0006732232,"domain_scores_codex":[0.9995951,0.0001246009,0.00006626076,0.00006573671,0.0000764311,0.00007192277],"domain_scores_gemma":[0.9995108,0.0001234119,0.0001112684,0.00005965346,0.00003997472,0.0001549814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00048978,0.0001725535,0.001541195,0.0000267671,0.00004731309,0.0003546182,0.00005158426,0.0001704782,0.9950186,0.0002881428,0.00007656849,0.001762321],"study_design_scores_gemma":[0.0002739649,0.002700164,0.2616798,0.00006133151,0.0003905194,0.009800146,0.0004597136,0.005127588,0.7119319,0.0009162358,0.006524381,0.0001342745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983012,0.0001393565,0.0007800573,0.00004553071,0.00001633478,0.0000108806,0.0002801466,0.00001367874,0.000412815],"genre_scores_gemma":[0.9982628,0.0000834047,0.0006112184,0.00006810936,0.000007128626,0.000009682652,0.0003992051,0.00002820771,0.000530191],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001299379,"threshold_uncertainty_score":0.004346848,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01629085393696081,"score_gpt":0.2516038910806057,"score_spread":0.2353130371436448,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}