{"id":"W2943732295","doi":"10.1002/jpen.1595","title":"Microbiome and Metabolome Profiles Associated With Different Types of Short Bowel Syndrome: Implications for Treatment","year":2019,"lang":"en","type":"article","venue":"Journal of Parenteral and Enteral Nutrition","topic":"Clinical Nutrition and Gastroenterology","field":"Nursing","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto Centre for Phenogenomics","funders":"Ministry of Education, Youth and Science; Ministerstvo Zdravotnictví Ceské Republiky; Chinese Academy of Sciences","keywords":"Metabolome; Microbiome; Deoxycholic acid; Chenodeoxycholic acid; Dysbiosis; Metabolomics; Feces; Gut flora; Calprotectin; Metabolism; Chemistry; Bile acid; Biology; Food science; Microbiology; Biochemistry; Internal medicine; Medicine; Bioinformatics; Chromatography; Inflammatory bowel disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004980611,0.0006061774,0.0009470721,0.0008456362,0.0003647331,0.0008417203,0.0002867947,0.0005199242,0.001700149],"category_scores_gemma":[0.001313123,0.0001287246,0.0008053078,0.0007535086,0.0002926284,0.0005160671,0.0006547591,0.0007148052,0.0002037525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005689578,"about_ca_system_score_gemma":0.0007796227,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001289789,"about_ca_topic_score_gemma":0.001584104,"domain_scores_codex":[0.9997202,0.00008977736,0.00003724923,0.00006623442,0.00004413923,0.00004236857],"domain_scores_gemma":[0.9995648,0.0001026978,0.0001676632,0.00001608538,0.00005790313,0.00009086882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.002724673,0.0003929058,0.7640244,0.001379604,0.000795058,0.001268867,0.0002469009,0.0008168375,0.01918823,0.0006003267,0.002939173,0.2056229],"study_design_scores_gemma":[0.0000864699,0.0009199096,0.9813157,0.001148643,0.0007439687,0.002297846,0.0007851872,0.001950333,0.002229138,0.001609796,0.00685877,0.00005432705],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.767899,0.2072149,0.006340195,0.00968803,0.0004365482,0.0001260355,0.003185596,0.0001952025,0.004914436],"genre_scores_gemma":[0.9453199,0.04193833,0.008082194,0.001034723,0.0004438988,0.0001485025,0.002176965,0.00002702576,0.0008285512],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001700149,"threshold_uncertainty_score":0.005687594,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02180199677970301,"score_gpt":0.2894122839412261,"score_spread":0.2676102871615231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}