{"id":"W2943733498","doi":"10.1136/gutjnl-2018-317855","title":"Infants born to mothers with IBD present with altered gut microbiome that transfers abnormalities of the adaptive immune system to germ-free mice","year":2019,"lang":"en","type":"article","venue":"Gut","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":216,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Institutes of Health; Crohn's and Colitis Foundation; National Institute of Diabetes and Digestive and Kidney Diseases; Kenneth Rainin Foundation; Crohn's and Colitis Foundation of America","keywords":"Microbiome; Offspring; Pregnancy; Immune system; Immunology; Biology; Gut flora; Acquired immune system; Immunity; Physiology; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001313992,0.0002173882,0.000272254,0.00005673577,0.00006565679,0.00001958326,0.0004383958,0.0001022901,0.00001542324],"category_scores_gemma":[0.000003455493,0.0001390698,0.00007801918,0.0001422677,0.0000794856,0.000006560745,0.0001261387,0.00008756699,0.00002063362],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004245185,"about_ca_system_score_gemma":0.0001636122,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007992893,"about_ca_topic_score_gemma":0.0004309384,"domain_scores_codex":[0.9988229,0.0000758029,0.0002215376,0.0003536176,0.0001487266,0.0003773727],"domain_scores_gemma":[0.9988852,0.000009828187,0.00009461514,0.0008040797,0.00009860803,0.0001076897],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001006239,0.00003300606,0.002092076,0.0001980228,0.0001441223,0.000001605425,0.001432782,0.0002776991,0.9935935,0.00006319981,0.001078105,0.00007961792],"study_design_scores_gemma":[0.002663557,0.002658556,0.0691332,0.0006590532,0.00007655391,0.0001227211,0.004953127,0.00001290133,0.9033225,0.000001874864,0.01585309,0.0005428846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957987,0.0002555933,0.0003017257,0.0005681862,0.0001444908,0.001127245,0.0002876962,0.00001310899,0.001503226],"genre_scores_gemma":[0.9967635,0.00001281225,0.0005986167,0.0004087547,0.00005615281,0.00003068955,0.00002302775,0.00003666414,0.00206981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09027104,"threshold_uncertainty_score":0.5671101,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006976725951263357,"score_gpt":0.2079798004921854,"score_spread":0.201003074540922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}