{"id":"W2943888952","doi":"10.1017/s0950268819000670","title":"Whole genome sequencing for improved understanding of <i>Mycobacterium tuberculosis</i> transmission in a remote circumpolar region","year":2019,"lang":"en","type":"article","venue":"Epidemiology and Infection","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"BC Centre for Disease Control; Yukon Health and Social Services; University of British Columbia","funders":"Canadian Institutes of Health Research; British Columbia Centre for Disease Control; Killam Trusts; University of British Columbia; Canada Research Chairs; British Columbia Lung Association","keywords":"Circumpolar star; Tuberculosis; Mycobacterium tuberculosis; Transmission (telecommunications); Epidemiology; Mycobacterium tuberculosis complex; Locus (genetics); Molecular epidemiology; Biology; Whole genome sequencing; Genome; Geography; Genetics; Evolutionary biology; Medicine; Genotype; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000458696,0.000262789,0.0002244953,0.001143416,0.0005691739,0.0008332903,0.0002489385,0.0003334027,0.001065665],"category_scores_gemma":[0.0007898528,0.0001196673,0.0002452495,0.002075983,0.0002526317,0.0002022981,0.0003427493,0.0003738067,0.0002588817],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002122401,"about_ca_system_score_gemma":0.003395266,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.5515956,"about_ca_topic_score_gemma":0.7174149,"domain_scores_codex":[0.9997697,0.00003655455,0.00001239673,0.00006651237,0.00006046988,0.00005431357],"domain_scores_gemma":[0.9995915,0.00005694212,0.0001000877,0.00003773147,0.0001451725,0.00006861061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002769073,0.00007928067,0.7206531,0.0005747429,0.0003615129,0.0007458093,0.001951365,0.003548868,0.1666404,0.001895031,0.006146092,0.09712696],"study_design_scores_gemma":[0.00000747393,0.00002500545,0.9827836,0.00009581567,0.00007916106,0.0002596983,0.0007846768,0.001320711,0.001805438,0.0002785678,0.0125498,0.00001002997],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9586022,0.006115595,0.01005234,0.0009981635,0.00004491283,0.0001410611,0.01594699,0.0001704186,0.007928355],"genre_scores_gemma":[0.9725959,0.002496038,0.01590385,0.0006098,0.00002386992,0.00003460807,0.006919852,0.00003606414,0.001379932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5515956,"threshold_uncertainty_score":0.9020903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06484320942993624,"score_gpt":0.3283370130701746,"score_spread":0.2634938036402383,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}