{"id":"W2944371379","doi":"10.1093/ibd/izz070","title":"Persistent Salmonella enterica Serovar Typhimurium Infection Induces Protease Expression During Intestinal Fibrosis","year":2019,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Inflammatory Bowel Disease","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Salmonella enterica; Microbiology; Salmonella; Serotype; Protease; Fibrosis; Enterobacteriaceae; Virology; Medicine; Biology; Bacteria; Escherichia coli; Pathology; Enzyme; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001544994,0.0003521632,0.0001780585,0.0002257652,0.0000933395,0.0002989128,0.0000840014,0.0002251508,0.0007516479],"category_scores_gemma":[0.0001233466,0.0001236106,0.0002349794,0.0001604805,0.0002290404,0.0001324599,0.0001669403,0.0003891699,0.0002480316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002237856,"about_ca_system_score_gemma":0.0001728677,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003451908,"about_ca_topic_score_gemma":0.0005146357,"domain_scores_codex":[0.9998506,0.00001967713,0.0000157008,0.00003220228,0.00002679337,0.00005491911],"domain_scores_gemma":[0.9997659,0.00003418788,0.0001002612,0.00001841378,0.00002955995,0.0000516755],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001323912,0.00001650903,0.001574649,0.00003991786,0.000003933721,0.00004633388,0.00001001803,0.00001654304,0.9976721,0.000009010976,0.00002833895,0.0004503362],"study_design_scores_gemma":[0.00003457915,0.001233932,0.1876981,0.00003063678,0.00005904644,0.0009315049,0.0001572723,0.001038677,0.8070062,0.0000540001,0.001745806,0.00001029041],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964721,0.001116803,0.001523856,0.00006089266,0.00001384026,0.00001236106,0.0004426461,0.00004760264,0.0003097491],"genre_scores_gemma":[0.996735,0.0006418331,0.00139017,0.00005629404,0.000008577968,0.00002125286,0.0006209115,0.000009505319,0.0005165139],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007516479,"threshold_uncertainty_score":0.002514482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006852810553437124,"score_gpt":0.2173770680067384,"score_spread":0.2105242574533013,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}