{"id":"W2944374104","doi":"10.1101/631937","title":"Dispersal of <i>Mycobacterium tuberculosis</i> to indigenous populations driven by historical European trade in the South Pacific","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Environmental Science and Research","keywords":"Biological dispersal; Viral phylodynamics; Tuberculosis; Indigenous; Clade; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis; Lineage (genetic); Geography; Biology; Evolutionary biology; Population; Ecology; Demography; Phylogenetics; Genetics; Sociology; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005535344,0.0002126028,0.0002690117,0.0007953906,0.0007283325,0.001056474,0.0003059267,0.000266387,0.00196409],"category_scores_gemma":[0.002081126,0.0001377312,0.0004453264,0.001755547,0.0003945843,0.0004808639,0.001012325,0.0006207281,0.0002562057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007975955,"about_ca_system_score_gemma":0.000873267,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.08194834,"about_ca_topic_score_gemma":0.08764616,"domain_scores_codex":[0.9997241,0.00005477408,0.0000135788,0.0001141489,0.00003329473,0.0000601532],"domain_scores_gemma":[0.9992162,0.0001789852,0.0002477141,0.00008459316,0.0001491869,0.0001232888],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001944306,0.00003342145,0.9630525,0.000248672,0.0003029155,0.0003583974,0.001582007,0.002400707,0.01528003,0.0004663701,0.002301347,0.01377919],"study_design_scores_gemma":[0.00001107138,0.00002402491,0.9905642,0.00006007753,0.00006819029,0.0001163436,0.001234045,0.00218332,0.0008073888,0.0002512031,0.004665263,0.00001467675],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921368,0.0002910146,0.000621859,0.0002166455,0.000007236091,0.000007991754,0.005439113,0.00001962293,0.001259728],"genre_scores_gemma":[0.9878065,0.0005034942,0.00194706,0.0001361919,0.00001131279,0.00001994289,0.009160108,0.00002521753,0.0003900859],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08194834,"threshold_uncertainty_score":0.1629427,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02549456723746999,"score_gpt":0.2596953444589326,"score_spread":0.2342007772214626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}