{"id":"W2944745053","doi":"10.1111/mmi.14269","title":"The <i>Campylobacter jejuni</i> helical to coccoid transition involves changes to peptidoglycan and the ability to elicit an immune response","year":2019,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":37,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; University of British Columbia","funders":"Canadian Institutes of Health Research; Agricultural Research Service; Wellcome Trust; Wellcome; Burroughs Wellcome Fund","keywords":"Peptidoglycan; Biology; Campylobacter jejuni; Microbiology; Cell wall; NOD1; Immune system; Innate immune system; Bacteria; Biochemistry; NOD2; Immunology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001816673,0.0002510491,0.0004071737,0.00002381508,0.0002730476,0.00006967073,0.0005597164,0.0001993188,0.00007144873],"category_scores_gemma":[0.0002363403,0.00008458636,0.0001151464,0.0003097573,0.0002522521,0.00003192008,0.0002371448,0.0001859197,0.000197783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003640843,"about_ca_system_score_gemma":0.00001028783,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004064816,"about_ca_topic_score_gemma":0.001213979,"domain_scores_codex":[0.9965751,0.001811523,0.0003190431,0.0006434285,0.00006621792,0.0005847382],"domain_scores_gemma":[0.9984095,0.0008958664,0.00006258886,0.0003080262,0.00009243028,0.0002316497],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002784249,0.00003699586,0.000297466,0.000002553713,0.00001569849,0.000002554724,0.000596478,0.00001164254,0.9901249,0.0002859851,0.0002977417,0.00554376],"study_design_scores_gemma":[0.001689325,0.007348943,0.243767,0.00005248241,0.00006388326,0.0002554987,0.002331379,0.00002417853,0.1676867,0.001066596,0.5746012,0.001112795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9053217,0.0002243421,0.0000350909,0.0930443,0.0001810307,0.001033444,0.00007073044,0.00004266417,0.0000467721],"genre_scores_gemma":[0.9623675,0.00003547803,0.00009850284,0.03712429,0.000100072,0.0001017786,0.00006376876,0.000003447986,0.0001051252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8224382,"threshold_uncertainty_score":0.3449332,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006660322451705404,"score_gpt":0.2135076160145271,"score_spread":0.2068472935628217,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}