{"id":"W2944780528","doi":"10.3389/fmicb.2019.01048","title":"The LiaFSR and BsrXRS Systems Contribute to Bile Salt Resistance in Enterococcus faecium Isolates","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Natural Science Foundation of China; Technische Universität Kaiserslautern","keywords":"Enterococcus faecium; Biology; Bacteria; Microbiology; Gene; In silico; Enterococcus; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000280708,0.0005780964,0.0004594073,0.0005993613,0.0001443841,0.0005075504,0.0001489724,0.0003375059,0.0009320958],"category_scores_gemma":[0.0004778568,0.0001704658,0.0004873224,0.0004215558,0.0002400576,0.0001821537,0.0004126386,0.0003517822,0.0003872873],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003075958,"about_ca_system_score_gemma":0.0002929477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002112826,"about_ca_topic_score_gemma":0.00176335,"domain_scores_codex":[0.9995193,0.00009682185,0.0000692745,0.00007635754,0.0001347434,0.0001034995],"domain_scores_gemma":[0.9996837,0.00006385491,0.000109169,0.00002889654,0.000067655,0.00004663814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001891502,0.00003877705,0.006889011,0.00008764156,0.00002075972,0.000212846,0.00008491935,0.0001701319,0.9893204,0.00004453895,0.00006086353,0.002880963],"study_design_scores_gemma":[0.00002834813,0.000689469,0.1982235,0.00005099702,0.0001980808,0.001841423,0.001244046,0.002873084,0.7884005,0.0001829422,0.006214981,0.00005252479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956619,0.0007192732,0.001640427,0.0001681206,0.00001461597,0.00002292119,0.0005580341,0.00006452631,0.001150246],"genre_scores_gemma":[0.9957417,0.0002857439,0.001771998,0.00006167823,0.000006255612,0.00001510199,0.0006311194,0.0000139427,0.00147241],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002112826,"threshold_uncertainty_score":0.004200995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004179399460601369,"score_gpt":0.1823467126839181,"score_spread":0.1781673132233167,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}