{"id":"W2944830299","doi":"10.1016/j.jinf.2019.05.012","title":"Better fit of codon usage of the polymerase and nucleoprotein genes to the chicken host for H7N9 than H9N2 AIVs","year":2019,"lang":"en","type":"letter","venue":"Journal of Infection","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"China Agricultural University; South China Agricultural University; Natural Science Foundation of Guangdong Province; National Natural Science Foundation of China","keywords":"Influenza A virus subtype H5N1; Biology; Scopus; Hemagglutinin (influenza); Virology; Gene; Genotype; Avian influenza virus; Genetics; Virus; MEDLINE","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000793719,0.0002025918,0.000598819,0.0002827993,0.0001215445,0.00002408299,0.0001636168,0.0002568407,0.00003508999],"category_scores_gemma":[0.000601456,0.000101258,0.0003612108,0.0001840634,0.0001508424,0.00009269448,0.0001226181,0.001064473,0.000004433679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008854927,"about_ca_system_score_gemma":0.0001349207,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003700968,"about_ca_topic_score_gemma":0.00005423837,"domain_scores_codex":[0.9982089,0.0001609403,0.0005899362,0.0001420992,0.0006611805,0.0002369765],"domain_scores_gemma":[0.9978843,0.0003249377,0.0008337095,0.0003411576,0.0005752504,0.00004063985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001155891,0.0001140139,0.06464665,0.002035735,0.001336971,0.00002271188,0.0009669006,0.00002256985,0.06517057,0.000003806982,0.8545246,0.009999555],"study_design_scores_gemma":[0.00219137,0.002421835,0.208782,0.001694346,0.0005500191,0.0002022112,0.00004861877,0.00002071774,0.06504557,0.00002979999,0.7188251,0.000188437],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.7281905,0.001263871,0.0001021573,0.2680416,0.0006194562,0.001470649,0.00008568996,0.000004611929,0.0002214222],"genre_scores_gemma":[0.485896,0.002459638,0.0006757557,0.486785,0.01904123,0.0001404113,0.00001811147,0.0002262982,0.004757636],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2422946,"threshold_uncertainty_score":0.4624667,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05524798889771321,"score_gpt":0.3405634001228727,"score_spread":0.2853154112251595,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}