{"id":"W2945040646","doi":"10.1093/sysbio/syz036","title":"Analysis of Spounaviruses as a Case Study for the Overdue Reclassification of Tailed Phages","year":2019,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":138,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Greek Orthodox Archdiocese of America; U.S. National Library of Medicine; National Institute of Allergy and Infectious Diseases; Biotechnology and Biological Sciences Research Council; Horizon 2020 Framework Programme; Narodowym Centrum Nauki; Narodowe Centrum Nauki; Battelle; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Helsingin Yliopisto; U.S. Department of Health and Human Services; National Institutes of Health; Directorate for Biological Sciences; Fonds De La Recherche Scientifique - FNRS; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Myoviridae; Siphoviridae; Biology; Podoviridae; Virus classification; Evolutionary biology; Genome; Taxon; Phage therapy; Taxonomy (biology); Bacteriophage; Comparative genomics; Genetics; Genomics; Gene; Zoology; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001254173,0.000359183,0.0003752187,0.002007659,0.001065789,0.00137538,0.000342892,0.0006575966,0.0003127696],"category_scores_gemma":[0.00176818,0.0001256554,0.000459618,0.001702992,0.0005909962,0.0005266093,0.0007521803,0.0006163935,0.0002296324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003323488,"about_ca_system_score_gemma":0.0003863727,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001283626,"about_ca_topic_score_gemma":0.002059162,"domain_scores_codex":[0.9988863,0.0002239705,0.00008962039,0.0003030963,0.0003077869,0.0001891551],"domain_scores_gemma":[0.9990104,0.0003025284,0.0001582879,0.0001091327,0.000304258,0.0001152827],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000603997,0.0003780495,0.2530026,0.0005130199,0.0000817139,0.006248738,0.008670302,0.0005797725,0.6567388,0.00128834,0.0003999783,0.07149467],"study_design_scores_gemma":[0.00001801541,0.001028335,0.7358005,0.0003644997,0.0002916804,0.0155045,0.01761532,0.007275703,0.1894722,0.001535321,0.0309747,0.0001191935],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941597,0.000743236,0.003299114,0.00007002254,0.00002611996,0.00007771906,0.0001602803,0.00001588315,0.001448006],"genre_scores_gemma":[0.9798326,0.001117219,0.01673155,0.00009010074,0.00002410806,0.00006371502,0.0009715201,0.00002735206,0.001141787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002007659,"threshold_uncertainty_score":0.006632745,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02499037483196771,"score_gpt":0.3232459369902937,"score_spread":0.298255562158326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}