{"id":"W2945199230","doi":"10.1101/642546","title":"Genotype Imputation and Reference Panel: A Systematic Evaluation","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Natural Science Foundation of Zhejiang Province; National Natural Science Foundation of China","keywords":"Imputation (statistics); Population; Panel data; Sample size determination; Statistics; Econometrics; Missing data; Mathematics; Demography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.2179344,0.002210966,0.005740604,0.004530597,0.001002256,0.003010496,0.003751915,0.001768246,0.004116987],"category_scores_gemma":[0.3479877,0.001391485,0.009741157,0.008168142,0.001150301,0.002429574,0.002297146,0.002399734,0.001058259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001443473,"about_ca_system_score_gemma":0.005996781,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003478356,"about_ca_topic_score_gemma":0.00452407,"domain_scores_codex":[0.8351871,0.1216173,0.01788726,0.01031194,0.01443449,0.0005619077],"domain_scores_gemma":[0.6427627,0.2504505,0.01727988,0.04554775,0.04286976,0.001089589],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"systematic_review","study_design_scores_codex":[0.005403166,0.0003403122,0.06875652,0.08289886,0.1098931,0.0004891258,0.0008442854,0.01643669,0.001516209,0.005014192,0.02503072,0.6833768],"study_design_scores_gemma":[0.009549757,0.007258521,0.1212341,0.09896068,0.4520793,0.005336018,0.0006891396,0.1056906,0.01123251,0.01918162,0.1677123,0.001075493],"study_design_candidate":"systematic_review","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.0461509,0.3821539,0.5348258,0.002813325,0.001642702,0.007137289,0.01710957,0.002432338,0.005734172],"genre_scores_gemma":[0.4390966,0.1292636,0.3777398,0.005451594,0.001008967,0.01181743,0.03238678,0.001754805,0.001480503],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.2179344,"threshold_uncertainty_score":0.9644261,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03022567016158852,"score_gpt":0.2629809674767854,"score_spread":0.2327552973151969,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}