{"id":"W2945257590","doi":"10.3835/plantgenome2018.12.0104","title":"Genome‐Wide Association Studies in Apple Reveal Loci for Aroma Volatiles, Sugar Composition, and Harvest Date","year":2019,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Horticultural and Viticultural Research","field":"Agricultural and Biological Sciences","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Single-nucleotide polymorphism; Quantitative trait locus; Malus; Candidate gene; SNP; Genetics; Association mapping; Genome-wide association study; Gene; Genetic association; Germplasm; Genotype; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004535051,0.0001205367,0.0002116885,0.000009172843,0.0002284705,0.00007593813,0.0001753338,0.00005898248,0.00004810332],"category_scores_gemma":[0.00008898735,0.0000365653,0.00004341964,0.000146794,0.00004231257,0.0001224742,0.00008913538,0.0001189002,0.0000695589],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007255618,"about_ca_system_score_gemma":0.000004244056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001485608,"about_ca_topic_score_gemma":0.0008145317,"domain_scores_codex":[0.998963,0.00008463499,0.0002026926,0.000224726,0.0001905775,0.0003343683],"domain_scores_gemma":[0.9988953,0.0008340884,0.00008178732,0.00004374398,0.00008598581,0.0000591206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008884432,0.00004484767,0.05470277,0.00004155402,0.00006756176,0.000003615085,0.0009972934,0.00001859522,0.941189,0.0001421457,0.002213359,0.0004904271],"study_design_scores_gemma":[0.000235847,0.000185339,0.9568373,0.00001994959,0.00001393036,0.000007732287,0.00140698,0.00005111141,0.001232696,0.0002340946,0.03959812,0.0001768915],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935468,0.0004374498,3.481832e-7,0.00465892,0.0000447683,0.0006738498,0.0005141716,0.00002077353,0.0001029557],"genre_scores_gemma":[0.9953188,0.0002755684,0.00002222143,0.0002812359,0.000155238,0.000045498,0.001245087,9.813546e-7,0.002655356],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9399563,"threshold_uncertainty_score":0.1757233,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0542852506482347,"score_gpt":0.2695363546061266,"score_spread":0.2152511039578919,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}