{"id":"W2945257590","doi":"10.3835/plantgenome2018.12.0104","title":"Genome‐Wide Association Studies in Apple Reveal Loci for Aroma Volatiles, Sugar Composition, and Harvest Date","year":2019,"lang":"en","type":"article","venue":"The Plant Genome","topic":"Horticultural and Viticultural Research","field":"Agricultural and Biological Sciences","cited_by":81,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Single-nucleotide polymorphism; Quantitative trait locus; Malus; Candidate gene; SNP; Genetics; Association mapping; Genome-wide association study; Gene; Genetic association; Germplasm; Genotype; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004300599,0.0003055965,0.000211043,0.0006771952,0.0001974322,0.0003510155,0.0001805728,0.0002370456,0.001250497],"category_scores_gemma":[0.0005093511,0.0001198283,0.0002704325,0.0007210469,0.0001881693,0.0001078845,0.0002347252,0.0002895209,0.0001112289],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001034127,"about_ca_system_score_gemma":0.0001062613,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009081829,"about_ca_topic_score_gemma":0.002193049,"domain_scores_codex":[0.9997643,0.00006323487,0.00001783682,0.00009427297,0.00003623845,0.00002406776],"domain_scores_gemma":[0.9994734,0.0002255122,0.0001665133,0.00003792074,0.00002507317,0.00007160756],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006034527,0.00007489016,0.8671876,0.00008183169,0.0007739158,0.0004300902,0.0001893638,0.0002688298,0.1172582,0.0001382591,0.0001601189,0.01283333],"study_design_scores_gemma":[0.000005266053,0.00003654055,0.9974864,0.000003587638,0.000101352,0.0001891894,0.00002644679,0.0002655138,0.001640614,0.00004847545,0.0001941112,0.000002656842],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983624,0.0005707641,0.000583221,0.00002551989,0.000005241695,0.000002916603,0.0002424039,0.00001539959,0.000192191],"genre_scores_gemma":[0.9985116,0.0002258681,0.0006176947,0.00001945025,0.000007115784,0.000004488999,0.000340445,0.000006482512,0.0002668893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001250497,"threshold_uncertainty_score":0.004183352,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0542852506482347,"score_gpt":0.2695363546061266,"score_spread":0.2152511039578919,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}