{"id":"W2945671179","doi":"10.3390/v11050454","title":"Still Something to Discover: Novel Insights into Escherichia coli Phage Diversity and Taxonomy","year":2019,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Ministerio de Ciencia e Innovación; Biotechnology and Biological Sciences Research Council; Deutsche Forschungsgemeinschaft; Deutsche Bundesstiftung Umwelt","keywords":"Escherichia coli; Biology; Genome; Taxonomy (biology); Escherichia; Microbiology; Phylogenetics; Genetics; Computational biology; Gene; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008159202,0.0002766217,0.0004559563,0.00207595,0.0004158088,0.001514941,0.000271242,0.000423109,0.0006514637],"category_scores_gemma":[0.0008373605,0.0001488232,0.0003005502,0.001260249,0.0004367818,0.001996979,0.0005696382,0.0007798073,0.0002648909],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002810222,"about_ca_system_score_gemma":0.0003929077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000395686,"about_ca_topic_score_gemma":0.0006899373,"domain_scores_codex":[0.9996864,0.00008924797,0.00002665422,0.00008287231,0.00004954301,0.00006529085],"domain_scores_gemma":[0.9995616,0.0001534302,0.00007858617,0.0000409208,0.00006646505,0.00009889493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001011793,0.0003145536,0.147123,0.001423076,0.0001111845,0.0009353055,0.004448189,0.001919015,0.3848382,0.007523512,0.001030577,0.4493215],"study_design_scores_gemma":[0.00005574441,0.001326823,0.7241449,0.001534785,0.0002217409,0.006164839,0.01288771,0.01942098,0.05691367,0.06266657,0.1144019,0.0002603774],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9403867,0.02610707,0.0271657,0.001518085,0.00007725072,0.00003334034,0.0006854855,0.0001418873,0.003884618],"genre_scores_gemma":[0.9455668,0.01288953,0.03799045,0.0007076393,0.000198191,0.00003107953,0.001413693,0.00004196086,0.00116075],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00207595,"threshold_uncertainty_score":0.004315019,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02805991097591662,"score_gpt":0.2400931355752493,"score_spread":0.2120332245993327,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}