{"id":"W2945678611","doi":"10.1101/636761","title":"Genome-wide association study of susceptibility to idiopathic pulmonary fibrosis","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis","field":"Medicine","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval; St. Paul's Hospital; University of British Columbia","funders":"Agencia Estatal de Investigación; Instituto de Salud Carlos III; Medical Research Council; National Institute for Health and Care Research; Agencia Canaria de Investigación, Innovación y Sociedad de la Información; National Institutes of Health; University of Leicester; Asthma and Lung UK; National Heart, Lung, and Blood Institute; British Lung Foundation; NIHR Leicester Biomedical Research Centre; Ministerio de Ciencia, Innovación y Universidades; Michael Smith Health Research BC; Instituto Tecnológico y de Energías Renovables; European Regional Development Fund; European Commission; Broad Institute; Wellcome Trust","keywords":"Idiopathic pulmonary fibrosis; Genome-wide association study; Genetic association; Biology; Disease; Allele; Genetic predisposition; Pulmonary fibrosis; Fibrosis; Genetics; Lung; Medicine; Single-nucleotide polymorphism; Gene; Genotype; Pathology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001392929,0.0007295107,0.001581793,0.0004706061,0.0001323712,0.00009448541,0.0005599335,0.0007737381,0.00009391381],"category_scores_gemma":[0.001057202,0.00077633,0.0005128492,0.0006653207,0.00005654544,0.0001472879,0.0008633718,0.001064434,0.0001859418],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001606184,"about_ca_system_score_gemma":0.001010587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002928183,"about_ca_topic_score_gemma":0.000005504207,"domain_scores_codex":[0.9949901,0.0003523036,0.001240202,0.001528657,0.001156116,0.0007326249],"domain_scores_gemma":[0.994723,0.0001519731,0.0008804132,0.002283724,0.001389303,0.0005716129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001789893,0.002442551,0.6106125,0.002598282,0.0004589571,0.0001190747,0.00006194439,0.0001724887,0.3815498,0.000009883272,0.0001836957,9.342588e-7],"study_design_scores_gemma":[0.0008661324,0.003392148,0.9820304,0.001658307,0.0009423832,2.043592e-8,0.00004796198,0.0001535322,0.009554646,0.000001157738,0.000600019,0.0007533201],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926541,0.001021391,0.0001717684,0.0004065817,0.001295101,0.003615969,0.0005383787,0.0002585615,0.00003815811],"genre_scores_gemma":[0.9980248,0.00009503057,0.0003540106,0.0003311766,0.0007154036,0.0002682822,0.000002223901,0.0001675923,0.00004143734],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3719951,"threshold_uncertainty_score":0.9994687,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01178001271886756,"score_gpt":0.2337578185562651,"score_spread":0.2219778058373975,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}