{"id":"W2945733117","doi":"10.1089/fpd.2018.2611","title":"Comparative Genomic Analysis of a Multidrug-Resistant <i>Listeria monocytogenes</i> ST477 Isolate","year":2019,"lang":"en","type":"article","venue":"Foodborne Pathogens and Disease","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Science and Technology Planning Project of Guangdong Province; National Natural Science Foundation of China","keywords":"Biology; Genetics; Genome; Mobile genetic elements; Gene; Virulence; Listeria monocytogenes; Phylogenetic tree; Transposable element; Whole genome sequencing; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001502953,0.000305545,0.0005720191,0.0001477695,0.00007246691,0.0000324083,0.0002379113,0.0001090358,0.00005609864],"category_scores_gemma":[0.00002623456,0.0002908746,0.0003318482,0.0003051782,0.000121765,0.000008452435,0.0003885898,0.00005015547,0.0000140245],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002168226,"about_ca_system_score_gemma":0.0001308772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002758231,"about_ca_topic_score_gemma":0.00004397255,"domain_scores_codex":[0.9982747,0.0001215236,0.0004438363,0.0006943842,0.0001545618,0.0003109455],"domain_scores_gemma":[0.9984012,0.00001983808,0.0002283857,0.0008457166,0.0001191576,0.0003856567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002055727,0.0001446719,0.03892855,0.00007373816,0.001174486,0.00001084868,0.0001506427,0.001012751,0.9560913,0.0001027825,0.00006430574,0.0001902177],"study_design_scores_gemma":[0.004553879,0.001588347,0.7836976,0.0000583819,0.005218076,0.00001038737,0.0006347584,0.01075408,0.1751075,0.0001592901,0.01649615,0.001721547],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934295,0.002914881,0.0003237808,0.00003212033,0.0001427269,0.0004220758,0.002194162,0.00001498377,0.0005257694],"genre_scores_gemma":[0.9980004,0.0001862946,0.000617679,0.0002339752,0.00006277522,0.00003348028,0.00064041,0.00003088579,0.0001940928],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7809838,"threshold_uncertainty_score":0.9999543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03997226355227196,"score_gpt":0.2997776572574358,"score_spread":0.2598053937051638,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}