{"id":"W2945754242","doi":"10.1101/636183","title":"Multiple independent origins of apicomplexan-like parasites","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Hakai Institute; Natural Sciences and Engineering Research Council of Canada; Universiti Malaya; Tula Foundation","keywords":"Biology; Plastid; Obligate; Lineage (genetic); Convergent evolution; Phylogenomics; Evolutionary biology; Apicomplexa; Phylogenetics; Plasmodium (life cycle); Genomics; Genome; Genetics; Chloroplast; Malaria; Plasmodium falciparum; Parasite hosting; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002751301,0.0002096935,0.0003026137,0.0005725122,0.0006426056,0.001227693,0.0003915738,0.0005835323,0.001485462],"category_scores_gemma":[0.0004586282,0.0002141647,0.0002065038,0.0004199973,0.0004612847,0.0007303144,0.001243254,0.00118406,0.0008793125],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000570413,"about_ca_system_score_gemma":0.0002119694,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004436431,"about_ca_topic_score_gemma":0.0006280603,"domain_scores_codex":[0.9997225,0.00002855375,0.00001492294,0.0001059685,0.00006678959,0.00006131554],"domain_scores_gemma":[0.9995412,0.00005179239,0.00009595171,0.0001103011,0.00008295879,0.0001179349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002403901,0.00004791562,0.0334758,0.0001195378,0.00003648727,0.0007068731,0.0006236311,0.0001620467,0.9463737,0.003349376,0.0002934194,0.01457089],"study_design_scores_gemma":[0.00004842829,0.0003432727,0.7059156,0.0001316941,0.0001076346,0.005746827,0.001555805,0.003873587,0.2280649,0.004409025,0.04969577,0.000107482],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9920697,0.0009214617,0.002924774,0.0001671774,0.0000202985,0.00002862582,0.0003502197,0.0000758742,0.003441847],"genre_scores_gemma":[0.9953235,0.000332831,0.002283235,0.00009484859,0.0000181636,0.00001961445,0.000600466,0.00003138376,0.001296048],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001485462,"threshold_uncertainty_score":0.004969358,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01550757777424422,"score_gpt":0.2352177652610385,"score_spread":0.2197101874867943,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}