{"id":"W2945873367","doi":"10.1371/journal.pgen.1008131","title":"Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)","year":2019,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Vetenskapsrådet","keywords":"Biology; Genetics; Selfing; Transcriptome; Genome; Outcrossing; Gene; Evolutionary biology; Gene expression; Botany; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009355532,0.0001286015,0.0001817817,0.00000746735,0.00009787328,0.00002726047,0.0004981186,0.00005560283,0.0003893413],"category_scores_gemma":[0.000007945848,0.00004428293,0.0000859819,0.0001918728,0.000120254,0.00005038545,0.00008583667,0.00008074477,0.000009460749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001053096,"about_ca_system_score_gemma":0.00004931847,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006300715,"about_ca_topic_score_gemma":0.001303894,"domain_scores_codex":[0.9990612,0.00007359093,0.0002636394,0.0002027842,0.0002157011,0.0001831372],"domain_scores_gemma":[0.9995105,0.00005618038,0.0001296344,0.0001591587,0.00006388354,0.00008060581],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001347677,0.00005685165,0.01437419,0.000009750307,0.00003029366,9.030378e-8,0.0006776783,0.00008616275,0.979937,0.0002381046,0.00001897391,0.00455743],"study_design_scores_gemma":[0.0004888359,0.0004915398,0.4473937,0.00002007686,0.0001252316,0.000008214532,0.0007056295,0.001715715,0.5396552,0.001169606,0.007988633,0.0002376901],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968874,0.00122354,0.00000174718,0.0009097522,0.0002353709,0.0003984504,0.00005036232,0.00001086538,0.0002825474],"genre_scores_gemma":[0.9990999,0.000196036,0.0001471738,0.00009084049,0.0001583175,0.000005156621,0.000007589476,0.000002091507,0.0002929145],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4402818,"threshold_uncertainty_score":0.4263014,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695961377766215,"score_gpt":0.2039394871853882,"score_spread":0.186979873407726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}