{"id":"W2945873367","doi":"10.1371/journal.pgen.1008131","title":"Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris)","year":2019,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":45,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Vetenskapsrådet","keywords":"Biology; Genetics; Selfing; Transcriptome; Genome; Outcrossing; Gene; Evolutionary biology; Gene expression; Botany; Population","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001095709,0.0002966959,0.0002047633,0.0002557132,0.0001567982,0.0004875245,0.0001437925,0.0003133726,0.0004369652],"category_scores_gemma":[0.000168972,0.0001526011,0.0002460805,0.0002411668,0.000283911,0.0006013833,0.0002536011,0.0005274176,0.0001503104],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002667738,"about_ca_system_score_gemma":0.0001647156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008408789,"about_ca_topic_score_gemma":0.001134119,"domain_scores_codex":[0.9998976,0.000004799919,0.000004644731,0.00006676728,0.00001394129,0.0000122037],"domain_scores_gemma":[0.9998665,0.00001630771,0.00004110336,0.00002101494,0.00002533416,0.00002970992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007865794,0.000003591012,0.002712907,0.00003605783,0.000007050035,0.00005429591,0.0000817804,0.00002844618,0.994934,0.0001092952,0.00002326784,0.001930674],"study_design_scores_gemma":[0.00002146393,0.0004064103,0.7746949,0.00005551286,0.000130901,0.001478497,0.0007787956,0.001515092,0.2101003,0.00101966,0.009757672,0.00004075967],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955043,0.001372925,0.001754718,0.0001979556,0.00001808329,0.000004401742,0.0004600461,0.00005026484,0.0006373122],"genre_scores_gemma":[0.9939406,0.0006785953,0.002341477,0.0002521344,0.00001988529,0.00001090449,0.001541868,0.00003760417,0.001176901],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008408789,"threshold_uncertainty_score":0.001935601,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01695961377766215,"score_gpt":0.2039394871853882,"score_spread":0.186979873407726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}