{"id":"W2946179101","doi":"10.3389/fmicb.2019.01093","title":"Fecal Microbial Communities in a Large Representative Cohort of California Dairy Cows","year":2019,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":101,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"University of California, Davis; California Dairy Research Foundation","keywords":"Feces; Biology; Operational taxonomic unit; Relative species abundance; Fecal coliform; Dairy cattle; Amplicon sequencing; Microbiome; Veterinary medicine; Animal science; Biotechnology; Abundance (ecology); Ecology; 16S ribosomal RNA; Water quality; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002885938,0.0002241016,0.0002310269,0.0004705038,0.0004855273,0.0004443922,0.0001907541,0.0001723989,0.0004395763],"category_scores_gemma":[0.0004276251,0.0002652736,0.0001315315,0.0004048455,0.0002047455,0.0001318143,0.0002481847,0.0001932976,0.0001017412],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004909351,"about_ca_system_score_gemma":0.0003671437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03787538,"about_ca_topic_score_gemma":0.06271546,"domain_scores_codex":[0.9997718,0.00002752286,0.00001184828,0.00009295579,0.00006520234,0.000030778],"domain_scores_gemma":[0.9996921,0.00003827891,0.00008763166,0.00002687428,0.00007359311,0.00008159092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001912485,0.000101825,0.9866398,0.00001673066,0.00005151341,0.0001011354,0.0003580341,0.00005531243,0.005332927,0.000006432263,0.0002251484,0.006919873],"study_design_scores_gemma":[0.000004453793,0.0001211008,0.9991108,0.00000275227,0.00001311516,0.00009046713,0.0001803617,0.00006455697,0.0001360004,0.000002493327,0.0002725032,0.000001542911],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995221,0.00009501789,0.00004973501,0.000007501334,9.7174e-7,0.000007107025,0.0001704211,0.000002709135,0.0001444482],"genre_scores_gemma":[0.9981424,0.000192244,0.0003339102,0.0000350443,0.000005270974,0.00001660597,0.0007944995,0.00000241055,0.0004777549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03787538,"threshold_uncertainty_score":0.07530987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006638081150965632,"score_gpt":0.252500908514302,"score_spread":0.2458628273633363,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}