{"id":"W2946298169","doi":"10.1186/s12864-019-5674-5","title":"Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion","year":2019,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Alberta Innovates; University of Alberta; Natural Sciences and Engineering Research Council of Canada; Alberta Health Services","keywords":"Lysogenic cycle; Prophage; Biology; Lysogen; Temperateness; Microbiology; Lytic cycle; Swarming motility; Bacteriophage; Genetics; Stenotrophomonas maltophilia; Gene; Escherichia coli; Virulence; Bacteria; Pseudomonas aeruginosa; Quorum sensing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007306577,0.0004978311,0.0002304408,0.0003038299,0.0001317089,0.0003417831,0.0001743291,0.0002301016,0.001061541],"category_scores_gemma":[0.0001713159,0.0001005989,0.0003096375,0.0002943487,0.0001406098,0.0001400957,0.0004105363,0.000413566,0.0004458668],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002771534,"about_ca_system_score_gemma":0.0001978236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008142405,"about_ca_topic_score_gemma":0.0006890909,"domain_scores_codex":[0.9999027,0.00001218938,0.000009945364,0.00001971217,0.00003265746,0.00002278089],"domain_scores_gemma":[0.9998293,0.00003162747,0.00005315605,0.00002061989,0.00002240254,0.00004281955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007709072,0.00001959944,0.0009513049,0.00002361532,0.000004146082,0.0001588361,0.00001444143,0.00002899345,0.9978119,0.00001870282,0.00001909922,0.0008721593],"study_design_scores_gemma":[0.00002971884,0.0003434685,0.03441766,0.00001586859,0.00004672514,0.002415248,0.0001952035,0.001367273,0.9565917,0.00007329952,0.004487381,0.00001646416],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973657,0.0001287063,0.001580167,0.000032996,0.000006748779,0.00001681229,0.0004465842,0.00005261504,0.0003696178],"genre_scores_gemma":[0.9923794,0.0001302712,0.002711406,0.00003027247,0.00000580499,0.00002749291,0.002758332,0.00003723389,0.001919827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001061541,"threshold_uncertainty_score":0.003551185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01246422385958201,"score_gpt":0.2104297684544603,"score_spread":0.1979655445948783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}