{"id":"W2946298169","doi":"10.1186/s12864-019-5674-5","title":"Novel Stenotrophomonas maltophilia temperate phage DLP4 is capable of lysogenic conversion","year":2019,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Directorate for Biological Sciences; Alberta Innovates; University of Alberta; Natural Sciences and Engineering Research Council of Canada; Alberta Health Services","keywords":"Lysogenic cycle; Prophage; Biology; Lysogen; Temperateness; Microbiology; Lytic cycle; Swarming motility; Bacteriophage; Genetics; Stenotrophomonas maltophilia; Gene; Escherichia coli; Virulence; Bacteria; Pseudomonas aeruginosa; Quorum sensing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00007382384,0.0001263066,0.0001680912,0.000024827,0.0000638938,0.00002052119,0.0002110384,0.00006969798,0.009354585],"category_scores_gemma":[0.000003331948,0.0001244142,0.0001087683,0.00009638648,0.00006609874,0.0001573278,0.0001861802,0.00009015583,0.003730325],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000187045,"about_ca_system_score_gemma":0.0000260514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001001598,"about_ca_topic_score_gemma":0.00009887105,"domain_scores_codex":[0.9991868,0.00001375014,0.0002237355,0.0002706214,0.00008919917,0.0002159344],"domain_scores_gemma":[0.9994688,0.00001656324,0.0001164321,0.0003203225,0.00001197626,0.00006589248],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003229684,0.00006779624,0.007958161,0.00001856362,0.00001113873,5.354992e-7,0.0002563396,0.0004206348,0.9904106,0.000007822242,0.000713705,0.0001023643],"study_design_scores_gemma":[0.001078629,0.0001324346,0.1202358,0.00001632832,0.00004047129,0.00003497914,0.0002796479,0.001160901,0.8356498,0.00001552549,0.04104617,0.0003093105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964756,0.00002746992,0.0002000952,0.00004352061,0.0003946527,0.0002341377,0.00008249862,0.00001343475,0.002528605],"genre_scores_gemma":[0.983397,0.00004278286,0.003131933,0.0002505319,0.00002856449,0.000002983398,0.00001328961,0.00001999314,0.01311291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1547608,"threshold_uncertainty_score":0.9970454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01246422385958201,"score_gpt":0.2104297684544603,"score_spread":0.1979655445948783,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}