{"id":"W2946661353","doi":"10.1093/dnares/dsz009","title":"Analysis of an improved Cyanophora paradoxa genome assembly","year":2019,"lang":"en","type":"article","venue":"DNA Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft; Région Hauts-de-France; Agence Nationale de la Recherche; National Science Foundation","keywords":"Biology; Monophyly; Genome; Algae; Botany; Ultrastructure; Lineage (genetic); Chloroplast; Evolutionary biology; Phylogenetics; Gene; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006974326,0.00009705906,0.000226054,0.000208174,0.00006142014,0.00002095981,0.0003299162,0.00009993031,0.00006446142],"category_scores_gemma":[0.00004241095,0.00008908398,0.0001250836,0.0004899828,0.00008561663,5.937297e-7,0.000230147,0.00009350374,0.00001758396],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001216807,"about_ca_system_score_gemma":0.00007480867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001263039,"about_ca_topic_score_gemma":0.00007638763,"domain_scores_codex":[0.9987604,0.0001242529,0.0001812369,0.000378007,0.0002259153,0.0003302151],"domain_scores_gemma":[0.9989345,0.00002451632,0.00004549613,0.0006516795,0.0002574159,0.00008636503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007067694,0.00006306294,0.01020537,0.00001114353,0.0005372747,8.171369e-7,0.000068418,0.0001106691,0.9881166,0.00003464928,0.0000213137,0.0007600152],"study_design_scores_gemma":[0.0007283646,0.001675333,0.3822135,0.000003311647,0.0001630744,0.000001564889,0.000462368,0.002911521,0.5901408,0.00008324794,0.02129915,0.000317843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973913,0.0005418892,0.00001509684,0.00003899123,0.00004250715,0.0002089394,0.00009279387,0.000001236284,0.001667193],"genre_scores_gemma":[0.9984837,0.0002283162,0.0002251792,0.00002467421,0.00006406535,0.00001692798,0.0001357368,0.0000148976,0.0008065177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3979758,"threshold_uncertainty_score":0.3632739,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0302860520830555,"score_gpt":0.3342288385305691,"score_spread":0.3039427864475135,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}