{"id":"W2946661353","doi":"10.1093/dnares/dsz009","title":"Analysis of an improved Cyanophora paradoxa genome assembly","year":2019,"lang":"en","type":"article","venue":"DNA Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":60,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Deutsche Forschungsgemeinschaft; Région Hauts-de-France; Agence Nationale de la Recherche; National Science Foundation","keywords":"Biology; Monophyly; Genome; Algae; Botany; Ultrastructure; Lineage (genetic); Chloroplast; Evolutionary biology; Phylogenetics; Gene; Genetics; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007508643,0.0009811213,0.0009695122,0.001124201,0.0006776116,0.0008986258,0.0005931301,0.0005452395,0.002080989],"category_scores_gemma":[0.002316752,0.0004986131,0.001096817,0.001359447,0.0001731291,0.0004351193,0.0006779779,0.001170229,0.001617926],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005627472,"about_ca_system_score_gemma":0.001033301,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003982056,"about_ca_topic_score_gemma":0.009543074,"domain_scores_codex":[0.9995021,0.00006859256,0.00004313053,0.0001830419,0.0001482059,0.00005496052],"domain_scores_gemma":[0.9989989,0.0002674545,0.00009642672,0.0001608882,0.0003783033,0.00009793662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004162042,0.000121692,0.005450459,0.0005548493,0.0001179707,0.0006315803,0.0003954985,0.004305092,0.957238,0.0004679242,0.001603658,0.02869696],"study_design_scores_gemma":[0.0003376546,0.0006808747,0.1513185,0.0002384237,0.0008619876,0.00141679,0.0006995983,0.1223703,0.627461,0.002201001,0.09220958,0.0002043766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7331102,0.001918477,0.2035659,0.0005405932,0.0002209803,0.0003852507,0.04919297,0.006892938,0.004172662],"genre_scores_gemma":[0.3803708,0.0008074949,0.4752579,0.0002728821,0.00004474194,0.0003204556,0.1364692,0.002657183,0.003799388],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003982056,"threshold_uncertainty_score":0.007917762,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0302860520830555,"score_gpt":0.3342288385305691,"score_spread":0.3039427864475135,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}