{"id":"W2946790898","doi":"10.1016/j.meegid.2019.05.011","title":"Identification and validation of reliable Aeromonas salmonicida subspecies salmonicida reference genes for differential gene expression analyses","year":2019,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Ocean Frontier Institute","keywords":"Aeromonas salmonicida; Biology; Reference genes; rpoB; Gene; Microbiology; Genetics; Gene expression; Pathogen; 16S ribosomal RNA; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001212602,0.0001253314,0.0001350813,0.00007362605,0.0001144114,0.00002499007,0.00005630685,0.000192623,0.000007926071],"category_scores_gemma":[0.00001647171,0.0001216995,0.00005120411,0.00007855495,0.00006503732,0.000008686587,0.00006777798,0.00004416496,0.000001324145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002003176,"about_ca_system_score_gemma":0.00002281201,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007176748,"about_ca_topic_score_gemma":0.0000181378,"domain_scores_codex":[0.9991378,0.00003626128,0.0002687814,0.0003510968,0.00007959675,0.000126439],"domain_scores_gemma":[0.9993247,0.00001046169,0.0001905248,0.000262567,0.000173737,0.00003804591],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003588172,0.00003448836,0.04096802,0.00003332306,0.00001947578,1.938767e-8,0.00000954979,0.0002201004,0.9575293,0.0003259954,0.00006102731,0.0007628168],"study_design_scores_gemma":[0.0002547664,0.0002504034,0.09606512,0.0000124962,0.00004173056,0.000006080023,0.00001104329,0.0009362996,0.9001322,0.000547094,0.001616169,0.0001265534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8907952,0.001171198,0.1074568,0.00002246065,0.00007657205,0.0003861395,0.00002709068,0.00001543295,0.00004909504],"genre_scores_gemma":[0.9950609,0.002218202,0.002062199,0.000008264174,0.00006303687,0.00008841464,0.0003544841,0.00001404239,0.0001304997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1053946,"threshold_uncertainty_score":0.4962763,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02158218245114289,"score_gpt":0.3026345563288568,"score_spread":0.2810523738777139,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}