{"id":"W2946955860","doi":"10.1101/654285","title":"The Avocado Genome Informs Deep Angiosperm Phylogeny, Highlights Introgressive Hybridization, and Reveals Pathogen-Influenced Gene Space Adaptation","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Horticultural and Viticultural Research","field":"Agricultural and Biological Sciences","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Secretaría de Agricultura, Ganadería, Desarrollo Rural, Pesca y Alimentación; Australian Government; National Science Foundation","keywords":"Biology; Persea; Synteny; Genome; Polyploid; Phylogenetics; Phylogenetic tree; Evolutionary biology; Lineage (genetic); Clade; Introgression; Gene; Adaptation (eye); Genetics; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009369246,0.0001557306,0.0001547271,0.0005504222,0.000252744,0.0004000758,0.0001421258,0.000233344,0.001317519],"category_scores_gemma":[0.0001922154,0.0001218887,0.0002011925,0.000499451,0.0001587968,0.0001927703,0.0002943835,0.0002966144,0.000252185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002386766,"about_ca_system_score_gemma":0.0001278641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002155758,"about_ca_topic_score_gemma":0.007285583,"domain_scores_codex":[0.9999163,0.000005803764,0.000002503919,0.00005217245,0.00001028093,0.00001296551],"domain_scores_gemma":[0.999868,0.00003308601,0.00004453649,0.0000185629,0.00001511016,0.00002063257],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000191248,0.00001359242,0.02527153,0.0000649188,0.00003131646,0.0001082618,0.0002399787,0.0002255661,0.9657021,0.0003503338,0.0002039744,0.007597181],"study_design_scores_gemma":[0.00002662511,0.000130328,0.9307926,0.00004773676,0.0001493712,0.0006191931,0.000544502,0.003921106,0.04498647,0.0007818792,0.01797537,0.00002490249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992961,0.0006887586,0.002137559,0.0000523025,0.00001045859,0.000005296197,0.002356692,0.0001140832,0.001673814],"genre_scores_gemma":[0.9929092,0.0002224726,0.001962149,0.00005400124,0.000008403768,0.000006481777,0.003902419,0.00004158844,0.0008932884],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002155758,"threshold_uncertainty_score":0.004407585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01293646574367835,"score_gpt":0.2139222094642773,"score_spread":0.200985743720599,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}