{"id":"W2947704185","doi":"10.1186/s12864-019-5732-z","title":"Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species","year":2019,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Phylogenetic tree; Armillaria; Evolutionary biology; Genome; Phylogenetics; Mitochondrial DNA; Genome size; Genetics; Population; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001986344,0.0004594169,0.000288211,0.001740024,0.0004834809,0.0004099763,0.0003661219,0.0004810358,0.0007999132],"category_scores_gemma":[0.0006465723,0.0001900859,0.0005058441,0.0008804783,0.0002370442,0.0002902228,0.0004197001,0.0003686741,0.0002831427],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003757945,"about_ca_system_score_gemma":0.0001508176,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001199194,"about_ca_topic_score_gemma":0.001801342,"domain_scores_codex":[0.9997913,0.00001816189,0.00002211724,0.00009599358,0.00003429834,0.00003804802],"domain_scores_gemma":[0.9993229,0.0001534676,0.0003246401,0.00004601321,0.0000807808,0.0000723038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004298433,0.00004628758,0.04033506,0.0001789016,0.00005954989,0.0001731209,0.0004368281,0.0003196567,0.9497678,0.00009593681,0.00005080066,0.00810621],"study_design_scores_gemma":[0.00002430573,0.0002950882,0.9479136,0.00005240719,0.0001825784,0.0009802065,0.0004666016,0.002813215,0.0425876,0.0002617977,0.004376113,0.00004646936],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978319,0.0003121897,0.0007699531,0.00001348918,0.000004423906,0.00001211875,0.0006905674,0.00002556107,0.0003397946],"genre_scores_gemma":[0.9954548,0.00009967769,0.001804859,0.00001780675,0.000005292608,0.0000252775,0.002390903,0.00001406422,0.0001872652],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001740024,"threshold_uncertainty_score":0.002726555,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01442345097352359,"score_gpt":0.2005751785149792,"score_spread":0.1861517275414556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}