{"id":"W2947736693","doi":"10.1371/journal.ppat.1007801","title":"Chromulinavorax destructans, a pathogen of microzooplankton that provides a window into the enigmatic candidate phylum Dependentiae","year":2019,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"Fisheries and Oceans Canada; University of British Columbia","funders":"Natural Environment Research Council; British Columbia Knowledge Development Fund; Natural Sciences and Engineering Research Council of Canada; EMBO; Canadian Institute for Advanced Research; Deutscher Akademischer Austauschdienst; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Sight Research UK; Canada Foundation for Innovation","keywords":"Phylum; Biology; Metagenomics; Effector; Ankyrin repeat; Host (biology); Obligate; Phylogenetics; Gene; Evolutionary biology; Genome; Genetics; Microbiology; Ecology; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001953935,0.0002152986,0.0002484294,0.00004386952,0.0001376105,0.00003205067,0.0005006659,0.0001657115,0.00006902297],"category_scores_gemma":[0.00004554676,0.0001709553,0.0001613234,0.0001073886,0.0001249875,0.000008832205,0.0002679217,0.0001270503,0.00006578406],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002210073,"about_ca_system_score_gemma":0.0001657322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008819121,"about_ca_topic_score_gemma":0.0001464105,"domain_scores_codex":[0.9987143,0.0001379802,0.0002129365,0.0003926654,0.0002410985,0.0003010687],"domain_scores_gemma":[0.9989846,0.00002426986,0.0001826862,0.0006401213,0.00008847756,0.0000798179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008094249,0.0000668907,0.177322,0.0001596826,0.0001403659,0.00001765952,0.0006189719,0.00001215241,0.8211001,0.00003188934,0.0000884008,0.0003609257],"study_design_scores_gemma":[0.0008765843,0.0003764766,0.04812441,0.00008044465,0.0001738265,0.00005685531,0.0005961548,0.00007381474,0.9471885,0.0003236971,0.001757964,0.00037129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972035,0.0010266,0.0001125897,0.00006443696,0.0001243088,0.0007222491,0.0003342534,0.00001392399,0.000398163],"genre_scores_gemma":[0.9983308,0.000136897,0.0007924202,0.0001497249,0.00008272743,0.00002844563,0.0002112197,0.00002509251,0.0002426609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1291976,"threshold_uncertainty_score":0.6971356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007150391348526761,"score_gpt":0.1986363908574511,"score_spread":0.1914859995089244,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}