{"id":"W2948286272","doi":"10.1371/journal.pone.0216401","title":"The anti-sigma factor MucA of Pseudomonas aeruginosa: Dramatic differences of a mucA22 vs. a ΔmucA mutant in anaerobic acidified nitrite sensitivity of planktonic and biofilm bacteria in vitro and during chronic murine lung infection","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"U.S. Department of Veterans Affairs","keywords":"Microbiology; Pseudomonas aeruginosa; Biofilm; Mutant; Biology; Sigma factor; Quorum sensing; Bacteria; Biochemistry; Escherichia coli; Gene; Genetics; RNA polymerase","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001497477,0.0004425137,0.0003175996,0.0002232122,0.0001337049,0.0003240278,0.0002488061,0.000362217,0.0006767223],"category_scores_gemma":[0.0002036127,0.0001887336,0.0003669747,0.0001821273,0.0002135147,0.0001693822,0.0003468653,0.0005302939,0.0003423419],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001668678,"about_ca_system_score_gemma":0.000195091,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001321262,"about_ca_topic_score_gemma":0.0008854197,"domain_scores_codex":[0.9997347,0.00003773853,0.00004298554,0.00004827144,0.00008660896,0.00004963035],"domain_scores_gemma":[0.9997647,0.00003211919,0.0000579262,0.00002588321,0.00002998993,0.00008933084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003420414,0.00001287834,0.0001046543,0.000006665703,0.000001242252,0.00002341093,0.00001033667,0.000007234379,0.9996474,0.00000970561,0.000004865815,0.000137458],"study_design_scores_gemma":[0.00001578362,0.0008945107,0.01895405,0.00001375708,0.0000191028,0.0007857174,0.0001782363,0.0007402757,0.9772387,0.00004527697,0.001100675,0.00001392349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984456,0.0002652113,0.0005760509,0.00005840071,0.00001755716,0.00001305655,0.0002906605,0.00002657183,0.0003068637],"genre_scores_gemma":[0.9966943,0.0001852152,0.001116419,0.00005559482,0.000007742561,0.00003156112,0.0005954067,0.00003097246,0.001282843],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001321262,"threshold_uncertainty_score":0.002627134,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01582834148052593,"score_gpt":0.244442594447758,"score_spread":0.2286142529672321,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}