{"id":"W2948640047","doi":"10.1080/22221751.2019.1622455","title":"Comparative genomics and genome biology of <i>Campylobacter showae</i>","year":2019,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"US-UK Fulbright Commission; National Institute of Diabetes and Digestive and Kidney Diseases; European Bioinformatics Institute; National Institutes of Health; National Science Foundation","keywords":"Genome; Biology; Comparative genomics; Gene; Genetics; Virulence; Microbiology; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001637195,0.0001437762,0.0003359451,0.00002610522,0.0001167585,0.00001347387,0.0001181873,0.0001088714,0.0006336051],"category_scores_gemma":[0.00001280522,0.00006737483,0.00009434867,0.000202243,0.0001187523,0.00006819919,0.00009922722,0.0001252578,0.00009261713],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002138926,"about_ca_system_score_gemma":0.000007094831,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002980005,"about_ca_topic_score_gemma":0.0002361881,"domain_scores_codex":[0.9990467,0.0001129782,0.0002716049,0.0002846906,0.00002964442,0.0002543396],"domain_scores_gemma":[0.9994488,0.0002372691,0.0001258159,0.00007258662,0.00005786564,0.00005761383],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006046287,0.00004652558,0.1430805,0.000004539778,0.00003394746,1.262965e-7,0.0001665246,0.00002324695,0.8555104,0.0003307794,0.0001247366,0.0006726144],"study_design_scores_gemma":[0.0002916132,0.0005369399,0.6460227,0.00001824202,0.00004454444,0.000058482,0.0004342143,0.00004461166,0.02096467,0.001063914,0.3301251,0.0003949492],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960979,0.0005086463,0.00003203375,0.0003195636,0.0002700032,0.0001758784,0.00006490576,0.0000454622,0.002485648],"genre_scores_gemma":[0.9990425,0.0002382368,0.0001053719,0.0002225822,0.0001137157,0.000007520957,0.00008096358,0.000001230214,0.0001878484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8345457,"threshold_uncertainty_score":0.6937532,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01745871907198891,"score_gpt":0.2470125655751393,"score_spread":0.2295538465031504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}