{"id":"W2949068689","doi":"10.1128/msystems.00038-17","title":"Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions","year":2017,"lang":"en","type":"article","venue":"mSystems","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Svenska Forskningsrådet Formas; Vetenskapsrådet; Stiftelsen för Strategisk Forskning","keywords":"Metagenomics; Archaea; Microbial metabolism; Metabolic pathway; Bacteria; Biology; Auxotrophy; Thermophile; Alkane; Biochemistry; Chemistry; Metabolism; Gene; Genetics; Catalysis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004778165,0.0004962435,0.0003613876,0.0005984632,0.0004018122,0.0007458203,0.0003181145,0.0003986134,0.000793986],"category_scores_gemma":[0.0007768221,0.000207531,0.0002947204,0.0004011098,0.0004229455,0.0004840218,0.0007405649,0.0003561351,0.0002484636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005691382,"about_ca_system_score_gemma":0.0005568994,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001193717,"about_ca_topic_score_gemma":0.001275922,"domain_scores_codex":[0.9996139,0.00008512373,0.00004867317,0.00006835248,0.0001155057,0.00006846548],"domain_scores_gemma":[0.9997118,0.00006445335,0.00007877568,0.00003651693,0.00003338678,0.0000750244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003371819,0.00004757871,0.003138837,0.00003718,0.00001269921,0.0001485421,0.00005912418,0.0001910234,0.9932972,0.0001944243,0.00003004454,0.002506232],"study_design_scores_gemma":[0.0001261544,0.001688531,0.06064656,0.00003178607,0.0000962441,0.00188933,0.0007785984,0.008018435,0.9210184,0.001537019,0.004113464,0.00005543674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980602,0.000296817,0.0006924983,0.0001019261,0.00001948997,0.00001436699,0.0001697414,0.00004361694,0.0006012769],"genre_scores_gemma":[0.9980222,0.0001373075,0.0009455605,0.00001668177,0.000006064967,0.00001489056,0.000242507,0.00001085736,0.0006038805],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001193717,"threshold_uncertainty_score":0.00412941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01810432077047748,"score_gpt":0.2568357665741297,"score_spread":0.2387314458036522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}