{"id":"W2949101432","doi":"10.1261/rna.059105.116","title":"A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and <i>N</i> <sup>1</sup> -methyladenosine modification","year":2016,"lang":"en","type":"article","venue":"RNA","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Cancer Institute; National Institutes of Health; Krembil Foundation; Canada Excellence Research Chairs, Government of Canada; Canadian Institutes of Health Research; Avon Foundation for Women","keywords":"Biology; Intron; Coding region; Genetics; Untranslated region; Exon; Gene; Start codon; RefSeq; RNA; Consensus sequence; Stop codon; Five prime untranslated region; Messenger RNA; Peptide sequence; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009739924,0.0001141502,0.0001242164,0.00002807726,0.00007012764,0.00001768288,0.0001149648,0.00008574482,0.000005795795],"category_scores_gemma":[0.00001681973,0.00007782219,0.00003136059,0.0000733761,0.0001470749,0.000009972938,0.00001569921,0.00005095155,0.000001371214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001931265,"about_ca_system_score_gemma":0.00003661798,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009433698,"about_ca_topic_score_gemma":0.00004096316,"domain_scores_codex":[0.9992756,0.00004471261,0.0001587013,0.0002651349,0.0001135301,0.0001423792],"domain_scores_gemma":[0.9994409,0.0000134682,0.00009188159,0.0003017212,0.00009507225,0.00005696574],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001496067,0.00003069392,0.004278899,0.00002338971,0.00002649533,7.151475e-7,0.00007996403,0.00003142253,0.9829528,0.0007954894,0.0005179222,0.01111265],"study_design_scores_gemma":[0.001782666,0.000723156,0.1099823,0.0001928778,0.00009209783,0.00005523063,0.00009537328,0.0002529266,0.870638,0.0002321572,0.01552927,0.0004240362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982163,0.0009889408,0.01535423,0.0008716774,0.0000174273,0.0001596536,0.00007498955,0.00001133913,0.0003587386],"genre_scores_gemma":[0.9985951,0.0004440444,0.0003663583,0.00005573304,0.0000676645,0.00003241974,0.00004968656,0.00001633928,0.0003727011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1123148,"threshold_uncertainty_score":0.3173497,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01559692257580775,"score_gpt":0.2481269798473829,"score_spread":0.2325300572715751,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}