{"id":"W2949101432","doi":"10.1261/rna.059105.116","title":"A common class of transcripts with 5′-intron depletion, distinct early coding sequence features, and <i>N</i> <sup>1</sup> -methyladenosine modification","year":2016,"lang":"en","type":"article","venue":"RNA","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Lunenfeld-Tanenbaum Research Institute; University of Toronto","funders":"National Institute of General Medical Sciences; National Human Genome Research Institute; National Cancer Institute; National Institutes of Health; Krembil Foundation; Canada Excellence Research Chairs, Government of Canada; Canadian Institutes of Health Research; Avon Foundation for Women","keywords":"Biology; Intron; Coding region; Genetics; Untranslated region; Exon; Gene; Start codon; RefSeq; RNA; Consensus sequence; Stop codon; Five prime untranslated region; Messenger RNA; Peptide sequence; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002253598,0.0003275934,0.0002386925,0.0006065764,0.0002736489,0.0002684125,0.0001770976,0.0002503311,0.001850924],"category_scores_gemma":[0.0006662069,0.00009113359,0.0003727741,0.0005044646,0.0002804628,0.0001561666,0.0002221514,0.0002684401,0.0006313039],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001510915,"about_ca_system_score_gemma":0.0002436286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005999106,"about_ca_topic_score_gemma":0.00133021,"domain_scores_codex":[0.9998172,0.00001118291,0.0000183846,0.00007989402,0.00004198712,0.00003149792],"domain_scores_gemma":[0.9991973,0.0002404936,0.0002612249,0.00009986055,0.0001037134,0.0000974438],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003643468,0.00003969296,0.07903214,0.0002553421,0.0000418866,0.00124462,0.0002191141,0.0004161884,0.8816086,0.0003866383,0.0008003085,0.03559102],"study_design_scores_gemma":[0.0000463076,0.0007974114,0.5338459,0.00009903953,0.0002432486,0.01325045,0.0004175534,0.01058211,0.4103718,0.001961713,0.0283257,0.00005884996],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9749293,0.0009688096,0.01589195,0.00007449918,0.00003872357,0.00005462289,0.005058256,0.0004605422,0.00252329],"genre_scores_gemma":[0.972991,0.0004669469,0.01177051,0.0002028682,0.00005967409,0.0001061908,0.01155072,0.0001146358,0.002737449],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001850924,"threshold_uncertainty_score":0.006191969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01559692257580775,"score_gpt":0.2481269798473829,"score_spread":0.2325300572715751,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}