{"id":"W2949123485","doi":"10.1101/672428","title":"Wide distribution of phage that infect freshwater SAR11 bacteria","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Syncrude; Genome Canada","keywords":"Prophage; Biology; Bacterioplankton; Marine bacteriophage; Genome; Phylogenetic tree; Metagenomics; Ecology; Bacteria; Bacteriophage; Gene; Genetics; Phytoplankton","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009476938,0.0003776568,0.0001960936,0.0009586913,0.0002832502,0.0004718438,0.0001140735,0.000323018,0.0009158258],"category_scores_gemma":[0.0002916563,0.0001490495,0.0003208282,0.0009096759,0.0001517068,0.0002023222,0.0003810158,0.0002236129,0.0002284984],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001794956,"about_ca_system_score_gemma":0.0001991704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001841398,"about_ca_topic_score_gemma":0.00169939,"domain_scores_codex":[0.9998748,0.000007959316,0.0000125648,0.00005393806,0.00002801436,0.00002269179],"domain_scores_gemma":[0.9997635,0.00004511627,0.0000811948,0.00002091361,0.00004880223,0.000040476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004138371,0.00004954231,0.1877843,0.000307523,0.00007232919,0.0003769908,0.000555042,0.0005282517,0.7924877,0.0001529669,0.0001453241,0.01712599],"study_design_scores_gemma":[0.00001268805,0.0003477535,0.9134434,0.00008190161,0.00009902217,0.00113139,0.0008742886,0.001287278,0.07754247,0.0001156376,0.005031298,0.00003287659],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975113,0.0002941681,0.0005735593,0.000008546265,0.000002509166,0.000009243554,0.001025365,0.0000281045,0.0005471929],"genre_scores_gemma":[0.9942356,0.0002784992,0.001719751,0.00001536442,0.000002565753,0.00001486863,0.003169855,0.000009909388,0.0005536469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001841398,"threshold_uncertainty_score":0.003661394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01027608534107322,"score_gpt":0.2066039424248657,"score_spread":0.1963278570837925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}