{"id":"W2949155616","doi":"10.1101/207092","title":"Bioconda: A sustainable and comprehensive software distribution for the life sciences","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Scientific Computing and Data Management","field":"Decision Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; University of Calgary; Public Health Agency of Canada","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Software; Software engineering; Computer science; Distribution (mathematics); Software package; Data science; Operating system","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.01403725,0.00353288,0.003621932,0.008275502,0.002395304,0.006830554,0.009249669,0.003142301,0.09001531],"category_scores_gemma":[0.03867121,0.00332585,0.002725325,0.00835828,0.001938463,0.005247972,0.01120709,0.007570724,0.200689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001914166,"about_ca_system_score_gemma":0.007969505,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005193964,"about_ca_topic_score_gemma":0.004781774,"domain_scores_codex":[0.9911783,0.001787949,0.0007923713,0.001710723,0.003659237,0.0008713363],"domain_scores_gemma":[0.9804355,0.00542149,0.001627882,0.005036722,0.004408485,0.003069991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003432686,0.00004926129,0.001020263,0.0007520564,0.0001592229,0.0001636262,0.0001505981,0.0005043396,0.002670276,0.00496787,0.9400101,0.049209],"study_design_scores_gemma":[0.0005303029,0.00007107679,0.002651272,0.0005572777,0.0001270546,0.0004517483,0.00006524501,0.006001983,0.005642107,0.02781224,0.9559014,0.0001881819],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.00292668,0.004249991,0.2005003,0.005383254,0.00204268,0.0007831423,0.18305,0.580946,0.02011789],"genre_scores_gemma":[0.01438854,0.004089379,0.2325055,0.00370543,0.0009678277,0.004166895,0.4544156,0.263433,0.02232781],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.9907503,"threshold_uncertainty_score":0.3011312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0862757035824429,"score_gpt":0.3277548992499626,"score_spread":0.2414791956675197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}