{"id":"W2949157136","doi":"10.1371/journal.pgen.1008233","title":"Parallel evolution leading to impaired biofilm formation in invasive Salmonella strains","year":2019,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Biology; Salmonella; Salmonella enterica; Biofilm; Microbiology; Serotype; Salmonella typhi; Virology; Bacteria; Gene; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009901799,0.0002930614,0.0002005665,0.0004257608,0.000169817,0.000246289,0.0001796093,0.0002897106,0.0005382344],"category_scores_gemma":[0.0003233314,0.000144265,0.0002254007,0.0002973475,0.0002507628,0.0001003951,0.0003904508,0.000406465,0.00009537516],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000227506,"about_ca_system_score_gemma":0.0002231339,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002224235,"about_ca_topic_score_gemma":0.003645147,"domain_scores_codex":[0.9998703,0.00001359999,0.00001316628,0.00003468576,0.0000357383,0.0000325459],"domain_scores_gemma":[0.999797,0.00003621542,0.00008150475,0.00001816925,0.00003045192,0.00003650082],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001869561,0.00004006755,0.02817187,0.00004806973,0.00002557175,0.0004341544,0.0002204331,0.00009753547,0.9689005,0.00008420031,0.00002864075,0.001761897],"study_design_scores_gemma":[0.00001712577,0.0004262951,0.8943908,0.00001645821,0.00005268602,0.002543319,0.000399534,0.0007207245,0.1002859,0.00008799014,0.001041208,0.00001799523],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995394,0.00007333436,0.0001489032,0.00001061395,0.00000163135,0.00000407383,0.00009580899,0.00000344926,0.0001227396],"genre_scores_gemma":[0.998937,0.0001147231,0.0004195153,0.00002479392,0.000001774812,0.000006729374,0.0002459137,0.000003503507,0.0002460375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002224235,"threshold_uncertainty_score":0.004422545,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0428130350596836,"score_gpt":0.2411799019674692,"score_spread":0.1983668669077857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}