{"id":"W2949157136","doi":"10.1371/journal.pgen.1008233","title":"Parallel evolution leading to impaired biofilm formation in invasive Salmonella strains","year":2019,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":53,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Biology; Salmonella; Salmonella enterica; Biofilm; Microbiology; Serotype; Salmonella typhi; Virology; Bacteria; Gene; Genetics; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001438747,0.0001250474,0.0001991082,0.00002880139,0.00004462576,0.00002130006,0.000185953,0.0001272597,0.000119076],"category_scores_gemma":[0.00006707782,0.00005900363,0.00005297017,0.0002885762,0.00001695064,0.0000738427,0.0000604428,0.00008678618,0.0005289725],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008143881,"about_ca_system_score_gemma":0.000008180128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004140261,"about_ca_topic_score_gemma":0.0008147786,"domain_scores_codex":[0.9989122,0.000103442,0.0002743251,0.000250908,0.0001212941,0.0003378621],"domain_scores_gemma":[0.9995837,0.0001329159,0.00007589596,0.00007119571,0.00004069174,0.00009564573],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001720489,0.00004859867,0.1517931,0.000009150383,0.000005355484,0.000002005149,0.0001992796,0.0005498367,0.8447887,0.000102124,0.0001920008,0.002292658],"study_design_scores_gemma":[0.0003493749,0.0008008544,0.9354162,0.00007133494,0.00001439998,0.0000156199,0.001110788,0.005089148,0.0541333,0.001803817,0.0007627933,0.0004323975],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979843,0.0001396197,0.00002338483,0.000580741,0.00009933263,0.0004073193,0.00001573801,0.0000396461,0.0007099146],"genre_scores_gemma":[0.9990196,0.00005314638,0.0002647612,0.0003789742,0.0001084625,0.00001819031,0.00005519294,0.000001322366,0.0001003935],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7906554,"threshold_uncertainty_score":0.6799048,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0428130350596836,"score_gpt":0.2411799019674692,"score_spread":0.1983668669077857,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}