{"id":"W2949167437","doi":"10.3390/microorganisms7060171","title":"Fugacium Spliced Leader Genes Identified from Stranded RNA-Seq Datasets","year":2019,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"China Postdoctoral Science Foundation; Government of Jiangxi Province; National Natural Science Foundation of China","keywords":"Gene; Intron; Trans-splicing; Biology; RNA splicing; Genetics; RNA-Seq; Alternative splicing; RNA; Computational biology; Transcriptome; Gene expression; Exon","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001492936,0.0001940069,0.0002459676,0.00002382675,0.0001927042,0.00003635181,0.0006843541,0.0001971291,0.083375],"category_scores_gemma":[0.0000078197,0.0001905688,0.00005981899,0.0001209979,0.0001932613,0.0001878071,0.0004723996,0.0002873137,0.02409507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006154433,"about_ca_system_score_gemma":0.00001411865,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001635963,"about_ca_topic_score_gemma":0.002413027,"domain_scores_codex":[0.9987612,0.0001653924,0.0002221431,0.0004045048,0.00009420602,0.0003525223],"domain_scores_gemma":[0.999037,0.00008096152,0.00005990742,0.0007372181,0.000005343762,0.00007953955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004001278,0.00007130258,0.002836883,0.000004407905,0.00002578485,0.000004552713,0.0003524041,0.0000301984,0.9790932,0.00002535315,0.01712655,0.0003893887],"study_design_scores_gemma":[0.0010715,0.00007958657,0.05434951,0.000007184427,0.00003450677,0.00001035064,0.0002325499,0.00001275744,0.8939108,0.001799545,0.04810168,0.0003899874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963504,0.00004947658,0.0000807157,0.0002527637,0.0004857352,0.0002415291,0.0003378686,0.00005654843,0.002144976],"genre_scores_gemma":[0.9948363,0.00001749003,0.0005089481,0.001301635,0.00005469424,0.00000387977,0.001556621,0.00002376529,0.001696626],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08518232,"threshold_uncertainty_score":0.9766648,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009294849323785825,"score_gpt":0.2116047330548561,"score_spread":0.2023098837310703,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}