{"id":"W2949167437","doi":"10.3390/microorganisms7060171","title":"Fugacium Spliced Leader Genes Identified from Stranded RNA-Seq Datasets","year":2019,"lang":"en","type":"article","venue":"Microorganisms","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"China Postdoctoral Science Foundation; Government of Jiangxi Province; National Natural Science Foundation of China","keywords":"Gene; Intron; Trans-splicing; Biology; RNA splicing; Genetics; RNA-Seq; Alternative splicing; RNA; Computational biology; Transcriptome; Gene expression; Exon","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000335698,0.0006265431,0.0005822398,0.001254083,0.00073874,0.0004983699,0.0002269611,0.000467621,0.001501472],"category_scores_gemma":[0.0007814141,0.0001746887,0.0006299606,0.001121792,0.0002316034,0.0003206952,0.00056576,0.0004061894,0.0006544667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002695547,"about_ca_system_score_gemma":0.0005154373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00229348,"about_ca_topic_score_gemma":0.007184336,"domain_scores_codex":[0.9997496,0.00001518625,0.00002209093,0.0001246301,0.00004728119,0.0000412676],"domain_scores_gemma":[0.999719,0.000106141,0.00005753612,0.00002172962,0.0000642206,0.00003140743],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005830069,0.00005324609,0.05615118,0.001525858,0.0001898212,0.00066039,0.0006095168,0.00119546,0.9079831,0.0004882582,0.002705607,0.0278545],"study_design_scores_gemma":[0.0000896105,0.0003985656,0.5966217,0.0003939939,0.0007805795,0.001826324,0.002097974,0.02229122,0.2812105,0.002233268,0.09192017,0.000136053],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9022501,0.002722633,0.01254758,0.0001111651,0.0001130491,0.0001023415,0.07807159,0.0008372902,0.003244334],"genre_scores_gemma":[0.7858292,0.001241593,0.04590207,0.0003224381,0.00004067576,0.0004250309,0.1630664,0.0003041767,0.002868467],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00229348,"threshold_uncertainty_score":0.005022943,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009294849323785825,"score_gpt":0.2116047330548561,"score_spread":0.2023098837310703,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}