{"id":"W2949221602","doi":"10.1128/msphere.00511-17","title":"Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus","year":2017,"lang":"en","type":"article","venue":"mSphere","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Canadian Institute for Advanced Research","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; National Science Foundation","keywords":"Staphylococcus saprophyticus; Biology; Virulence; Bacterial adhesin; Microbiology; Microbiome; Pathogen; Genetics; Gene; Staphylococcus aureus; Bacteria; Staphylococcus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009222968,0.0000627327,0.0001073841,0.000005416111,0.0001314026,0.00004771782,0.0001835905,0.00005499313,0.0001453809],"category_scores_gemma":[0.00003420869,0.00002518666,0.00003898357,0.00007282199,0.00003578867,0.00008318789,0.00004926734,0.00006254669,0.00001307578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001570834,"about_ca_system_score_gemma":0.000005632826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005731258,"about_ca_topic_score_gemma":0.001442596,"domain_scores_codex":[0.999501,0.00001784732,0.0001330366,0.0001299187,0.00008225824,0.0001359618],"domain_scores_gemma":[0.9997365,0.00002258859,0.0001254175,0.0000680378,0.00002058126,0.00002682764],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003788041,0.00009488789,0.02900306,0.00001486473,0.000008768827,0.000005856728,0.0001436901,0.0000470871,0.7736185,0.0004146376,0.00008385631,0.1965269],"study_design_scores_gemma":[0.000374225,0.0004186398,0.9678156,0.0001165107,0.000007908514,9.637653e-7,0.0008351671,0.001676304,0.02595628,0.0007911142,0.001807452,0.0001998379],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973477,0.00007084994,0.000005032942,0.0002407677,0.00006307336,0.0001054363,0.00001646173,0.00001197993,0.00213877],"genre_scores_gemma":[0.9995354,0.0000119391,0.0002110877,0.000007936623,0.00003822797,0.000003571723,0.000007208668,4.949022e-7,0.0001841402],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9388126,"threshold_uncertainty_score":0.1591819,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02816872497694992,"score_gpt":0.2346866152290583,"score_spread":0.2065178902521084,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}