{"id":"W2949259007","doi":"10.1101/680553","title":"The anaerobic digestion microbiome: a collection of 1600 metagenome-assembled genomes shows high species diversity related to methane production","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Anaerobic Digestion and Biogas Production","field":"Engineering","cited_by":29,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Metagenomics; Anaerobic digestion; Biogas; Microbiome; Biology; Biomass (ecology); Microbial ecology; Biotechnology; Methane; Ecology; Bioinformatics; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008697349,0.001001439,0.0007981334,0.002189421,0.0009226306,0.001134146,0.0004033413,0.0006387578,0.001558124],"category_scores_gemma":[0.00158638,0.0003196604,0.001361464,0.003155011,0.0002594065,0.0005945099,0.001245705,0.0005643153,0.001071719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004025777,"about_ca_system_score_gemma":0.0009167638,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00179715,"about_ca_topic_score_gemma":0.002843916,"domain_scores_codex":[0.9991034,0.0001536959,0.00009336889,0.0003454781,0.0001715156,0.0001325878],"domain_scores_gemma":[0.9994462,0.0001337886,0.0001480872,0.00009372063,0.0001064954,0.00007167365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002000149,0.0003391971,0.1914894,0.003680143,0.001329729,0.0007757136,0.0007181411,0.006467679,0.6910563,0.001219559,0.0113535,0.08957066],"study_design_scores_gemma":[0.0001040652,0.0005069769,0.7359302,0.0007212552,0.001166461,0.001807607,0.001040179,0.01698334,0.1285515,0.002245195,0.1107369,0.0002063782],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7804371,0.007073188,0.01410344,0.0002833389,0.0000995721,0.0001301707,0.1928898,0.001445764,0.003537807],"genre_scores_gemma":[0.6509201,0.002207449,0.0347944,0.0002197966,0.00002784525,0.0002324354,0.3098411,0.0003517112,0.001405109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002189421,"threshold_uncertainty_score":0.005212426,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01109471196767316,"score_gpt":0.1902869853586695,"score_spread":0.1791922733909963,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}