{"id":"W2949845804","doi":"10.1099/mgen.0.000219","title":"Genome-based transmission modelling separates imported tuberculosis from recent transmission within an immigrant population","year":2018,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Engineering and Physical Sciences Research Council","keywords":"Immigration; Transmission (telecommunications); Tuberculosis; Quarter (Canadian coin); Demography; Incidence (geometry); Geography; Cluster (spacecraft); Population; Mycobacterium tuberculosis; Environmental health; Medicine; Pathology; Sociology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001537626,0.0005976098,0.0006335615,0.0006655808,0.000497741,0.001019,0.0009672494,0.001153834,0.001641104],"category_scores_gemma":[0.005327072,0.0003791127,0.001068793,0.0006222646,0.0006821335,0.000854666,0.0006887745,0.001012853,0.0002214309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009423842,"about_ca_system_score_gemma":0.0008357693,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04256853,"about_ca_topic_score_gemma":0.02908841,"domain_scores_codex":[0.9993862,0.0003822677,0.00002556707,0.0001158711,0.00002127497,0.00006870506],"domain_scores_gemma":[0.9982972,0.001283245,0.0001972248,0.0000810264,0.00006699743,0.00007435968],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.000372487,0.0001542993,0.1300251,0.0001136377,0.0003312484,0.000716096,0.001222058,0.8289004,0.002222305,0.02089569,0.001373961,0.01367268],"study_design_scores_gemma":[0.00003390161,0.00007054647,0.01299781,0.00002973894,0.00005951235,0.0001546994,0.000278746,0.9742334,0.0001568781,0.0108489,0.001109955,0.00002579409],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8956226,0.0007665309,0.09801876,0.0008989542,0.0001112079,0.00008190712,0.001454834,0.0001362483,0.002908849],"genre_scores_gemma":[0.9798232,0.0003758851,0.01747046,0.0001187174,0.00003019592,0.00005763983,0.0007164188,0.00003673975,0.001370823],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04256853,"threshold_uncertainty_score":0.08464152,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03740897845494287,"score_gpt":0.3014377713332035,"score_spread":0.2640287928782606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}