{"id":"W2949845804","doi":"10.1099/mgen.0.000219","title":"Genome-based transmission modelling separates imported tuberculosis from recent transmission within an immigrant population","year":2018,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Engineering and Physical Sciences Research Council","keywords":"Immigration; Transmission (telecommunications); Tuberculosis; Quarter (Canadian coin); Demography; Incidence (geometry); Geography; Cluster (spacecraft); Population; Mycobacterium tuberculosis; Environmental health; Medicine; Pathology; Sociology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006546001,0.0003577909,0.0006312806,0.0002264306,0.0003031985,0.00004435462,0.0001986173,0.0003924561,0.000609485],"category_scores_gemma":[0.00002743524,0.000306176,0.000214318,0.0002839198,0.0001313098,0.0001358048,0.00002253914,0.0004054131,0.00008852244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003339204,"about_ca_system_score_gemma":0.0002426944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005298107,"about_ca_topic_score_gemma":0.0002978469,"domain_scores_codex":[0.9972321,0.0002764346,0.0008455823,0.0007612286,0.0002298406,0.0006548121],"domain_scores_gemma":[0.9984652,0.00006651883,0.0001540758,0.0004921192,0.0002207497,0.0006013641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002735642,0.0002990173,0.001395987,0.00004221994,0.0001098343,0.00001571666,0.001537049,0.01210309,0.9605541,0.000004522954,0.0001922534,0.02101063],"study_design_scores_gemma":[0.004461825,0.001551735,0.0197304,0.00018474,0.0003643287,0.00004607936,0.0001346898,0.6654789,0.2597567,0.0004500508,0.04709445,0.0007461402],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9405609,0.0007506689,0.05508836,0.002493126,0.0001543722,0.0006758283,0.00009196006,0.000123713,0.00006103034],"genre_scores_gemma":[0.953136,0.001267098,0.04012722,0.001381269,0.0006293986,0.0000149401,0.00329806,0.00008782447,0.00005821761],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7007974,"threshold_uncertainty_score":0.999939,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03740897845494287,"score_gpt":0.3014377713332035,"score_spread":0.2640287928782606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}