{"id":"W2949918020","doi":"10.1128/mra.00362-19","title":"Whole-Genome Sequence of Lactobacillus acidophilus PNW3, Isolated from Weaned Piglets of the Indigenous South African Windsnyer Pig Breed","year":2019,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"North-West University; National Research Foundation","keywords":"Pseudogene; Biology; Genome; Genetics; Whole genome sequencing; Lactobacillus acidophilus; Breed; Gene; Contig; Bacteria; Probiotic","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001832346,0.0002984925,0.0004514944,0.00005790121,0.0001149431,0.000009048223,0.0007330683,0.0002762886,0.00003655175],"category_scores_gemma":[0.00002560162,0.0002329907,0.0001831585,0.0001817112,0.0003717414,0.000001480499,0.0005399531,0.000150325,0.00003322558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003197708,"about_ca_system_score_gemma":0.000110721,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001292506,"about_ca_topic_score_gemma":0.00003510091,"domain_scores_codex":[0.9982421,0.0001583981,0.000496387,0.0005515255,0.0001059799,0.0004455762],"domain_scores_gemma":[0.9984708,0.00002153657,0.0004655021,0.0008288824,0.0001600596,0.00005318879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002534117,0.00007785258,0.04941058,0.0000169173,0.0004008701,0.000001195232,0.00175742,0.0001586672,0.9476993,0.000001331086,0.0001230207,0.00009944938],"study_design_scores_gemma":[0.00505173,0.002698777,0.0450009,0.000115485,0.0002695053,0.00005017706,0.002987331,0.0000183839,0.2542194,0.00008476853,0.6883144,0.001189124],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9888684,0.001343102,0.00001741602,0.00009833813,0.0002449823,0.0005274445,0.00838251,0.00000447522,0.0005133765],"genre_scores_gemma":[0.9962833,0.00004633196,0.00006758183,0.0003394758,0.00006997717,0.00001025809,0.002086842,0.00002810939,0.001068146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6934799,"threshold_uncertainty_score":0.9501087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01107647218795877,"score_gpt":0.2046214550981247,"score_spread":0.193544982910166,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}