{"id":"W2950128084","doi":"10.1101/375543","title":"Examination of Australian <i>Streptococcus suis</i> Isolates From Clinically Affected Pigs in a Global Context and the Genomic Characterisation of ST1 as a Predictor of Virulence","year":2018,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Streptococcal Infections and Treatments","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cegep de Saint Hyacinthe","funders":"","keywords":"Streptococcus suis; Biology; Clade; Virulence; Context (archaeology); Whole genome sequencing; Genome; Locus (genetics); Serotype; Multilocus sequence typing; Virology; Gene; Genetics; Microbiology; Phylogenetic tree; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003726517,0.000215976,0.0002476238,0.001012899,0.0003804846,0.0005148238,0.0001655536,0.0003304188,0.000973095],"category_scores_gemma":[0.0006229556,0.0001302761,0.0002385638,0.001017155,0.0003120174,0.0001831139,0.0004113935,0.0002593797,0.0001703948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002703583,"about_ca_system_score_gemma":0.0001905622,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007450277,"about_ca_topic_score_gemma":0.01182251,"domain_scores_codex":[0.9997693,0.00004836578,0.00001896399,0.00006406446,0.00004593522,0.0000534873],"domain_scores_gemma":[0.9995036,0.00007135775,0.0002037737,0.00003582735,0.0001150018,0.00007047961],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001654959,0.00003927113,0.9387869,0.00008374695,0.00004845362,0.0009456594,0.001182388,0.0002012173,0.05006009,0.00004244805,0.0002022499,0.008242185],"study_design_scores_gemma":[8.330736e-7,0.00007208793,0.998233,0.000006023479,0.00001389262,0.0005076737,0.0003120794,0.00007199043,0.0005150477,0.000007804385,0.0002581312,0.00000143788],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991313,0.00008297223,0.00008806872,0.00002428166,0.000001793787,0.0000060898,0.0001902633,0.000001884152,0.0004734629],"genre_scores_gemma":[0.9989748,0.000128554,0.000203341,0.00002860399,0.000006612866,0.000004129246,0.0004240699,0.000001737613,0.0002280915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007450277,"threshold_uncertainty_score":0.01481384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01548167629960881,"score_gpt":0.2629479204841911,"score_spread":0.2474662441845823,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}