{"id":"W2950217164","doi":"10.1101/674713","title":"Catabolism of alkylphenols in <i>Rhodococcus</i> via a <i>meta</i> -cleavage pathway associated with genomic islands","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Genome British Columbia; Génome Québec; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Alkylphenol; Catabolism; Dioxygenase; Gene; Biochemistry; Chemistry; Operon; Rhodococcus; Metabolic pathway; Biology; Mutant; Enzyme","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001124058,0.0005333605,0.0003397216,0.0002827909,0.0001365263,0.0005227196,0.0002567316,0.0002784448,0.0005709463],"category_scores_gemma":[0.0002181322,0.0002091009,0.0005215856,0.0002486084,0.0001714791,0.000204479,0.0004594206,0.0005240751,0.0006404851],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003291991,"about_ca_system_score_gemma":0.0004042485,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003945626,"about_ca_topic_score_gemma":0.002691916,"domain_scores_codex":[0.9998118,0.00001680351,0.00001876324,0.00005288531,0.00005528265,0.0000444632],"domain_scores_gemma":[0.9998425,0.00001982339,0.00005332045,0.00002552326,0.00003801907,0.00002078031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001971937,0.000007299973,0.0006092217,0.00002151515,0.000004130653,0.00003366745,0.00001372744,0.00003376751,0.9983541,0.00001985016,0.00002002461,0.000862925],"study_design_scores_gemma":[0.000007828437,0.0001366518,0.03117022,0.0000186352,0.00004342528,0.0004814756,0.0001910528,0.001354718,0.9636251,0.00007405743,0.002879173,0.00001771704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924412,0.0005375246,0.003333553,0.0001369307,0.00001436622,0.00004485512,0.001407673,0.000160122,0.001923869],"genre_scores_gemma":[0.9843264,0.000396878,0.007840339,0.0001338557,0.000008380986,0.00007030873,0.003734544,0.00009670678,0.003392721],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003945626,"threshold_uncertainty_score":0.007845283,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007870130316696321,"score_gpt":0.1854030927245566,"score_spread":0.1775329624078603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}