{"id":"W2950329335","doi":"10.1515/jib-2019-0022","title":"Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0","year":2019,"lang":"en","type":"review","venue":"Berichte aus der medizinischen Informatik und Bioinformatik/Journal of integrative bioinformatics","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute; Japan Science and Technology Agency; Engineering and Physical Sciences Research Council; National Institute of General Medical Sciences; Directorate for Biological Sciences; Okinawa Institute of Science and Technology Graduate University; Ministry of Education, Culture, Sports, Science and Technology; Biotechnology and Biological Sciences Research Council; National Institute of Advanced Industrial Science and Technology","keywords":"Computer science; Systems biology; Notation; Semantics (computer science); Biological network; Visualization; Biological database; Graph; Set (abstract data type); Workflow; Theoretical computer science; Programming language; Computational biology; Data mining; Bioinformatics; Database; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005193473,0.003077193,0.002327679,0.004483693,0.0005273261,0.00599271,0.005976762,0.003283556,0.04949192],"category_scores_gemma":[0.00954485,0.001398389,0.002101907,0.006413544,0.001614706,0.004542578,0.002220599,0.005165829,0.05103537],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002219523,"about_ca_system_score_gemma":0.003882363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003044721,"about_ca_topic_score_gemma":0.001780178,"domain_scores_codex":[0.9971266,0.001032183,0.0004813305,0.0003626357,0.0008783031,0.0001189306],"domain_scores_gemma":[0.9937522,0.003306977,0.0004785488,0.0006956263,0.001547172,0.0002194276],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001649845,0.00006451733,0.0001884476,0.01127759,0.0000970892,0.0003377447,0.0005710683,0.008099676,0.00685567,0.2367406,0.4298061,0.3057965],"study_design_scores_gemma":[0.00001573887,0.00001286374,0.0000462847,0.0004973057,0.00001663497,0.0002348398,0.00001820502,0.001034902,0.0008731505,0.01191333,0.9853141,0.00002261567],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"review","genre_scores_codex":[0.0005748674,0.06942951,0.7715202,0.004982083,0.003672445,0.00123059,0.02615449,0.04707325,0.07536263],"genre_scores_gemma":[0.01441658,0.1159647,0.6834483,0.01065401,0.001784117,0.005206125,0.07440428,0.01396078,0.08016124],"genre_candidate":"review","genre_consensus":null,"teacher_disagreement_score":0.04949192,"threshold_uncertainty_score":0.1655669,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03887601159087656,"score_gpt":0.3347127606672707,"score_spread":0.2958367490763942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}