{"id":"W2950428394","doi":"10.1200/cci.18.00102","title":"Meta-Analysis of 1,200 Transcriptomic Profiles Identifies a Prognostic Model for Pancreatic Ductal Adenocarcinoma","year":2019,"lang":"en","type":"review","venue":"JCO Clinical Cancer Informatics","topic":"Pancreatic and Hepatic Oncology Research","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research; Mount Sinai Hospital; Princess Margaret Cancer Centre; University Health Network","funders":"Natural Sciences and Engineering Research Council of Canada; Ministero dello Sviluppo Economico; Canadian Institutes of Health Research; Hebrew University of Jerusalem; Government of Ontario","keywords":"Hazard ratio; Gene expression profiling; Proportional hazards model; Malignancy; Oncology; Pancreatic cancer; Receiver operating characteristic; Survival analysis; Pancreatic ductal adenocarcinoma; Transcriptome; Microarray; Internal medicine; Adenocarcinoma; Bioinformatics; Biology; Medicine; Confidence interval; Computational biology; Gene; Cancer; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","metaepi_broad"],"consensus_categories":[],"category_scores_codex":[0.00245532,0.0007010209,0.01625412,0.000809687,0.00008235507,0.00004620478,0.0005916007,0.0009898993,0.0004976772],"category_scores_gemma":[0.001170587,0.0004542326,0.009156823,0.001011381,0.0004786582,0.0001804371,0.0001188489,0.0009713327,0.0000662076],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002114422,"about_ca_system_score_gemma":0.003525676,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004351148,"about_ca_topic_score_gemma":0.00005208095,"domain_scores_codex":[0.9919088,0.0002539827,0.005759994,0.0004732285,0.0009268012,0.0006771655],"domain_scores_gemma":[0.9924283,0.003264244,0.002165905,0.001182986,0.0006687009,0.0002898452],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","study_design_scores_codex":[0.0005404479,0.0006201721,0.01454098,0.207907,0.7450539,0.00001092519,0.001270002,0.0001411454,1.235056e-7,0.000225595,0.003720275,0.02596936],"study_design_scores_gemma":[0.001104102,0.0004993171,0.000471033,0.00160195,0.8653958,0.00001306694,0.0001469379,0.106616,1.628276e-7,0.0000482885,0.02373174,0.0003715209],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001393614,0.9853002,0.003357327,0.00008099236,0.000285401,0.007055098,0.001988809,0.00004777128,0.0004907635],"genre_scores_gemma":[0.0003625137,0.9836835,0.005393861,0.0002154526,0.0001852054,0.003099624,0.000889298,0.00007952078,0.006091019],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.2063051,"threshold_uncertainty_score":0.999791,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.5852000031908167,"score_gpt":0.542822965173494,"score_spread":0.04237703801732262,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}