{"id":"W2950529543","doi":"10.1093/gbe/evz110","title":"Recent Secondary Contacts, Linked Selection, and Variable Recombination Rates Shape Genomic Diversity in the Model Species Anolis carolinensis","year":2019,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Research Institute Centers, New York University Abu Dhabi; York University; New York University Abu Dhabi","keywords":"Biology; Anolis; Recombination; Evolutionary biology; Selection (genetic algorithm); Diversity (politics); Natural selection; Genetic diversity; Genetics; Zoology; Ecology; Lizard; Gene; Demography","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001065273,0.000114343,0.0001007562,0.0006547185,0.0002754408,0.0002044527,0.0001900009,0.0002314135,0.0009368641],"category_scores_gemma":[0.0003133328,0.00007920939,0.0001188195,0.0002476464,0.0002400578,0.0001839322,0.0002047149,0.0001861741,0.00009942597],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002380539,"about_ca_system_score_gemma":0.000109802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002053187,"about_ca_topic_score_gemma":0.004476756,"domain_scores_codex":[0.9999555,0.000009326668,0.000001874593,0.0000196124,0.000006093394,0.000007504401],"domain_scores_gemma":[0.9998441,0.00005419751,0.00005166524,0.00001110415,0.00001439244,0.00002455514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003196554,0.00008949325,0.1505967,0.00008181382,0.00009495277,0.0002756867,0.0005564552,0.007147722,0.828035,0.001339533,0.0001616597,0.01130138],"study_design_scores_gemma":[0.00002046663,0.0001799627,0.9561322,0.000008955117,0.00006892109,0.0003501048,0.0003067084,0.02805895,0.01258096,0.001265358,0.001000299,0.00002705787],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995406,0.00003545089,0.0001897232,0.000009717965,2.654319e-7,0.000001288598,0.00004998615,0.000005797729,0.0001672115],"genre_scores_gemma":[0.9995164,0.00002462738,0.0002299976,0.000005771627,7.183642e-7,0.000004024095,0.0001132052,0.000003348884,0.0001019609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002053187,"threshold_uncertainty_score":0.004082501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01357887649312654,"score_gpt":0.2140029780134182,"score_spread":0.2004241015202917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}