{"id":"W2950599017","doi":"10.1371/journal.pone.0216705","title":"CiliaCarta: An integrated and validated compendium of ciliary genes","year":2019,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Genetic and Kidney Cyst Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":175,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Sociale en Geesteswetenschappen, NWO; Biotechnology and Biological Sciences Research Council; Canadian Institutes of Health Research; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Medical Research Council; Stichting Metakids; Nierstichting; Radboud Universiteit; Deutsche Forschungsgemeinschaft; Radboud Universitair Medisch Centrum; National Institute for Health and Care Research; Michael Smith Health Research BC; Seventh Framework Programme; Virgo Consortium; Foundation Fighting Blindness","keywords":"Ciliopathy; Ciliopathies; Cilium; Biology; Zebrafish; Candidate gene; Transcriptome; Computational biology; Joubert syndrome; Genetics; Phenotype; Gene; Bioinformatics; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000584905,0.000105693,0.0001714066,0.00002649265,0.00001913277,0.000009109813,0.0001063812,0.00008381785,0.0001154523],"category_scores_gemma":[0.00002876221,0.00009750979,0.0000301167,0.00004891794,0.00005905287,0.000002981243,0.00006375951,0.00003758815,0.00001771019],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002609694,"about_ca_system_score_gemma":0.00005899947,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002484791,"about_ca_topic_score_gemma":0.000006200061,"domain_scores_codex":[0.9993256,0.00004906915,0.0001397154,0.0002401495,0.0001166617,0.0001287589],"domain_scores_gemma":[0.9994355,0.000005770738,0.00004700051,0.0002915699,0.0001049706,0.0001151618],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007328366,0.0004292315,0.04102701,0.00007404543,0.000122637,7.153002e-7,0.00001773358,0.000003455334,0.9578995,0.000008401586,0.0001591949,0.0001848234],"study_design_scores_gemma":[0.0005064337,0.0004427236,0.01748038,0.00003624811,0.00008007565,0.000001683829,0.0001284508,0.0001281248,0.9800358,0.00002494479,0.000997009,0.0001380582],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980189,0.00106229,0.00002773567,0.0000398132,0.00002697989,0.0001811219,0.00009713555,0.00001162523,0.0005343521],"genre_scores_gemma":[0.9973106,0.0002242343,0.001195782,0.0001117195,0.00004160003,0.000006804999,0.0004356527,0.00001405093,0.0006594976],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02354662,"threshold_uncertainty_score":0.3976334,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01887166316791366,"score_gpt":0.2157354504193193,"score_spread":0.1968637872514057,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}