{"id":"W2950659867","doi":"10.1128/cmr.00135-18","title":"Global Extraintestinal Pathogenic Escherichia coli (ExPEC) Lineages","year":2019,"lang":"en","type":"review","venue":"Clinical Microbiology Reviews","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":581,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; University of British Columbia","funders":"British Columbia Centre for Disease Control; Agence Nationale de la Recherche; London School of Economics and Political Science","keywords":"Biology; Multilocus sequence typing; Escherichia coli; Typing; Genotype; Molecular epidemiology; Population; Antibiotic resistance; Genetics; Database; Gene; Demography; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00146202,0.0009968522,0.001688602,0.003737669,0.0002256157,0.001229336,0.0008041522,0.000887374,0.007077387],"category_scores_gemma":[0.003066866,0.0003242664,0.00108179,0.003930379,0.000284829,0.001147156,0.0008623197,0.001132928,0.001959332],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008524663,"about_ca_system_score_gemma":0.002493661,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00201887,"about_ca_topic_score_gemma":0.003193456,"domain_scores_codex":[0.9992575,0.0001529131,0.000182074,0.0001420116,0.0002017316,0.00006380284],"domain_scores_gemma":[0.9985891,0.0006868908,0.0002954982,0.00004282958,0.0003155486,0.00007015037],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000154762,0.00002662108,0.0006262893,0.07884554,0.0004812405,0.0001283534,0.0001222811,0.0002366467,0.001220794,0.001503643,0.02213614,0.8945177],"study_design_scores_gemma":[0.00002450237,0.0001595261,0.003887297,0.03811467,0.00131293,0.001172713,0.0001323616,0.00005851671,0.0007551121,0.0009206081,0.9534286,0.00003311992],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001456542,0.9985629,0.000100614,0.0001921493,0.0001274803,0.00001033019,0.0001227331,0.000008138401,0.0007300114],"genre_scores_gemma":[0.001319875,0.9975798,0.0002547919,0.0002050652,0.00008643102,0.00001626204,0.0001786731,0.000003193935,0.0003559735],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.007077387,"threshold_uncertainty_score":0.02367628,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1070069641831084,"score_gpt":0.4148606505102353,"score_spread":0.307853686327127,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}