{"id":"W2950668898","doi":"10.1534/genetics.116.193979","title":"Widespread Historical Contingency in Influenza Viruses","year":2016,"lang":"en","type":"article","venue":"Genetics","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Virology; Viral evolution; Genetics; Contingency; H5N1 genetic structure; Influenza A virus; Evolutionary biology; Virus; Coronavirus disease 2019 (COVID-19); Genome; Gene; Disease; Infectious disease (medical specialty); Epistemology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006350048,0.0001478269,0.0003050236,0.0005321091,0.0004704514,0.0003996733,0.0003296162,0.0003273161,0.0006049792],"category_scores_gemma":[0.002676075,0.0002101811,0.0001965309,0.0005428689,0.0007226649,0.0005227323,0.0004954429,0.0004126006,0.00005050119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006085012,"about_ca_system_score_gemma":0.0003169009,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003636911,"about_ca_topic_score_gemma":0.004630885,"domain_scores_codex":[0.9997348,0.0001079472,0.000008502469,0.00008815494,0.00004274738,0.00001779887],"domain_scores_gemma":[0.9991274,0.0004732032,0.0002206537,0.00007228593,0.00004560991,0.00006077967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004471159,0.0001060789,0.3833725,0.0003783504,0.0004848068,0.001727344,0.00120854,0.3583914,0.1416086,0.06622875,0.001492028,0.04455442],"study_design_scores_gemma":[0.00002410992,0.0001773415,0.3076016,0.00002645969,0.00009849964,0.001005672,0.000561638,0.6244263,0.009020875,0.05363816,0.003327302,0.00009215431],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9772813,0.0003066136,0.02076915,0.0001211139,0.000005013473,0.000009305545,0.0001063344,0.00006175296,0.001339489],"genre_scores_gemma":[0.997586,0.00006177315,0.002220305,0.00001596722,0.000002547432,0.000005365887,0.00003990459,0.000005750534,0.00006248999],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003636911,"threshold_uncertainty_score":0.007231474,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1673047091916703,"score_gpt":0.403976300639327,"score_spread":0.2366715914476567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}