{"id":"W2950972387","doi":"10.1101/031898","title":"Direct estimate of the spontaneous mutation rate uncovers the effects of drift and recombination in the <i>Chlamydomonas reinhardtii</i> plastid genome","year":2015,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Chlamydomonas reinhardtii; Plastid; Recombination; Biology; Genetics; Chlamydomonas; Genome; Mutation; Mutation rate; Evolutionary biology; Gene; Chloroplast; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001105273,0.0003335718,0.0004080941,0.0009531907,0.000301048,0.0003656595,0.0004335716,0.0003658552,0.0004708534],"category_scores_gemma":[0.002298419,0.0001925371,0.0004943812,0.0004797122,0.0002351392,0.0002077272,0.0003836296,0.0003974504,0.0001776526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000402639,"about_ca_system_score_gemma":0.0002100731,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002484728,"about_ca_topic_score_gemma":0.003165997,"domain_scores_codex":[0.9994661,0.00008507438,0.00003139553,0.0002793454,0.00009742076,0.00004059622],"domain_scores_gemma":[0.9983908,0.0006352414,0.0003008195,0.000373235,0.0001954588,0.0001044656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002314995,0.0001681439,0.447489,0.0001577829,0.0007100764,0.0001888142,0.0001601673,0.01692761,0.5093782,0.0007958047,0.0004243383,0.02336853],"study_design_scores_gemma":[0.00002603763,0.0002621832,0.7957819,0.0000251493,0.0002494263,0.0005649122,0.0001282827,0.1019651,0.09884208,0.0007441531,0.00135843,0.00005237871],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991305,0.0002752984,0.007108,0.00001692465,0.000005646127,0.00001228438,0.0009488288,0.0001115719,0.0002164597],"genre_scores_gemma":[0.992726,0.00007541457,0.00551074,0.00001812141,0.000003528057,0.00001526459,0.001551528,0.00001866743,0.00008066609],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002484728,"threshold_uncertainty_score":0.005845368,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004332306200258264,"score_gpt":0.2032733848940929,"score_spread":0.1989410786938347,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}