{"id":"W2950988036","doi":"10.1105/tpc.17.00010","title":"Subgenome Dominance in an Interspecific Hybrid, Synthetic Allopolyploid, and a 140-Year-Old Naturally Established Neo-Allopolyploid Monkeyflower","year":2017,"lang":"en","type":"article","venue":"The Plant Cell","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":278,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Institute of Food and Agriculture; U.S. Department of Agriculture","keywords":"Biology; Polyploid; Genetics; Genome; Dominance (genetics); Gene; Retrotransposon; Transposable element; DNA methylation; Locus (genetics); Genome evolution; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007418808,0.0001491503,0.0001349522,0.0003229706,0.0001424234,0.0001329596,0.0001401757,0.0001630338,0.0005803428],"category_scores_gemma":[0.0001261157,0.00010332,0.0001292419,0.0001149266,0.0001276514,0.0001215112,0.0002152733,0.0002885775,0.00009556106],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003143468,"about_ca_system_score_gemma":0.0000968474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000985702,"about_ca_topic_score_gemma":0.001691275,"domain_scores_codex":[0.999949,0.000004574043,0.000002505764,0.00002594017,0.0000103576,0.000007647875],"domain_scores_gemma":[0.9998671,0.00002723456,0.00003949091,0.00000960804,0.00001337479,0.00004325773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006349723,0.0000076816,0.002417088,0.000005520716,0.000003883435,0.00004903528,0.00003657773,0.00001455456,0.9967316,0.00001718774,0.000003195304,0.000650174],"study_design_scores_gemma":[0.0000144384,0.0008701881,0.6904011,0.000005021694,0.00004341959,0.001449753,0.0002391696,0.001380052,0.3037361,0.0001178475,0.001718692,0.00002415611],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994723,0.00008488091,0.0001948846,0.00000423299,0.000001184513,0.00000258357,0.00006908434,0.000008853426,0.0001618678],"genre_scores_gemma":[0.9978669,0.00006595836,0.0005487833,0.00002030168,0.000002775264,0.00001241135,0.0004364126,0.00001186988,0.001034678],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000985702,"threshold_uncertainty_score":0.002280712,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01515549592509366,"score_gpt":0.1996704338804657,"score_spread":0.1845149379553721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}