{"id":"W2951010635","doi":"10.1101/226027","title":"Biofilm Lithography: High-resolution cell patterning via optogenetic adhesin expression","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Stanford Bio-X; American Cancer Society","keywords":"Biofilm; Bacterial adhesin; Synthetic biology; Cell biology; Nanotechnology; Escherichia coli; Microbiology; Chemistry; Biophysics; Biology; Gene; Bacteria; Materials science; Computational biology; Biochemistry; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002333207,0.0003715673,0.0002267485,0.0002272883,0.0001459138,0.0004600412,0.0003595734,0.0005250243,0.0008174022],"category_scores_gemma":[0.0002445439,0.0003101016,0.0002565543,0.0001808604,0.0004106044,0.0003343455,0.000712259,0.0006187438,0.0005513259],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003043172,"about_ca_system_score_gemma":0.0002253704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003472553,"about_ca_topic_score_gemma":0.0005549827,"domain_scores_codex":[0.9997901,0.00002636391,0.0000115275,0.00004107397,0.00009392192,0.00003699279],"domain_scores_gemma":[0.9998854,0.00004386769,0.00003332952,0.00001677836,0.000008206274,0.00001234215],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000008181501,0.000004526341,0.00004542767,0.00002551939,0.000001464284,0.00002142459,0.00001246612,0.0001092882,0.9978477,0.0002299829,0.00004957798,0.001644515],"study_design_scores_gemma":[0.000006920205,0.0000242723,0.0004144003,0.000003397162,0.000002697792,0.00008306349,0.000009101878,0.001525485,0.99581,0.0001367883,0.001977324,0.000006566199],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7471798,0.00337135,0.238253,0.00106124,0.0002053059,0.0001401726,0.0005919898,0.001024371,0.008172678],"genre_scores_gemma":[0.8523707,0.002431363,0.138693,0.0002759451,0.00004281225,0.0001241934,0.000285114,0.0001881929,0.005588716],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008174022,"threshold_uncertainty_score":0.002734423,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01005634818111895,"score_gpt":0.2120388857823631,"score_spread":0.2019825376012442,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}