{"id":"W2951173789","doi":"10.1371/journal.ppat.1007074","title":"Pseudomonas aeruginosa type IV minor pilins and PilY1 regulate virulence by modulating FimS-AlgR activity","year":2018,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Biochemical and Structural Characterization","field":"Biochemistry, Genetics and Molecular Biology","cited_by":95,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Government of Ontario","keywords":"Pilin; Pilus; Biology; Virulence; Operon; Bacterial adhesin; Regulon; Microbiology; Mutant; Fimbriae Proteins; Biofilm; Fimbria; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005857224,0.0001698733,0.0001384505,0.00001640242,0.0001484709,0.00002690353,0.0001050923,0.0001795825,0.00002817392],"category_scores_gemma":[0.00009338282,0.0001524557,0.00003896202,0.00008782862,0.0001418783,0.000008557182,0.0001158712,0.00009485047,0.00001112472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008654553,"about_ca_system_score_gemma":0.0000172146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008266073,"about_ca_topic_score_gemma":0.000004444608,"domain_scores_codex":[0.9990489,0.00004775207,0.0001392513,0.0004191425,0.0001111556,0.000233722],"domain_scores_gemma":[0.9994512,0.000009848153,0.00008185221,0.0002485139,0.0001087918,0.00009975398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006802543,0.00002807662,0.003308629,0.00001947329,0.00002140797,0.000001217806,0.00004122184,2.903279e-7,0.9926977,0.000006589352,0.0001852086,0.003622226],"study_design_scores_gemma":[0.0001976255,0.0002135692,0.01710968,0.00001502275,0.00002200652,0.00001077122,0.000007538763,0.0009717279,0.980284,0.00005427573,0.0008951044,0.000218631],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990093,0.0001438972,0.0002148242,0.0001107987,0.0001013055,0.0001240018,0.0001105517,0.00002346871,0.0001619129],"genre_scores_gemma":[0.9980503,0.000087181,0.0007672935,0.0001642943,0.0003542643,0.000005345545,0.0001978488,0.0000185437,0.0003549306],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01380106,"threshold_uncertainty_score":0.6216964,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01104999274222279,"score_gpt":0.2235198037734804,"score_spread":0.2124698110312576,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}